| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 489943 |
| Family | CBM49 |
| Protein Properties | Length: 628 Molecular Weight: 69311.4 Isoelectric Point: 9.2695 |
| Chromosome | Chromosome/Scaffold: 6 Start: 20719659 End: 20723244 |
| Description | glycosyl hydrolase 9C3 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM49 | 534 | 611 | 2.9e-37 |
| ITISQKMTLSWKNEGKVYYRYSTRLTNRSTKTLKILKISITKLYGPIWGVTKTGTSFTFPSWMQSLPAGKSMEFVYIH | |||
| GH9 | 26 | 487 | 0 |
| DYKQALSKSILFFEAQRSGHLPPNQRVSWRSHSGLYDGKSSGVDLVGGYYDAGDNVKFGLPMAFTVTTMCWSIIEYGGQLKSNGELGHAIDAVKWGTDYF IKTHPEPNVLYGEVGDGKSDHYCWQRPEEMTTDRKAYKIDRNNPGSDLAGETAAAMAAASIVFRRSDPSYSAELLRHAHQLFEFADKYRGKYDSSITVAQ KYYRSVSGYNDELLWAAAWLYQATNDKYYLDYLGKNGDSMGGTGWSMTEFGWDVKYAGVQTLVAKVLMQGKGGEHTAVFERYQQKAEQFMCSLLGKSTKN IKKTPGGLIFRQSWNNMQFVTSASFLAAVYSDYLSSSKRDLRCSQGNISPSQLLDFSKSQVDYILGDNPRATSYMVGYGENYPRQVHHRGSSIVSFNVDQ KFVTCRGGYATWFSRKGSDPNVLTGAIVGGPDAYDNFADQRDNYEQTEPATYNNAPLLGVLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 628 Download |
| MGSTTTISIL VLLLLGLVQL AVSGHDYKQA LSKSILFFEA QRSGHLPPNQ RVSWRSHSGL 60 YDGKSSGVDL VGGYYDAGDN VKFGLPMAFT VTTMCWSIIE YGGQLKSNGE LGHAIDAVKW 120 GTDYFIKTHP EPNVLYGEVG DGKSDHYCWQ RPEEMTTDRK AYKIDRNNPG SDLAGETAAA 180 MAAASIVFRR SDPSYSAELL RHAHQLFEFA DKYRGKYDSS ITVAQKYYRS VSGYNDELLW 240 AAAWLYQATN DKYYLDYLGK NGDSMGGTGW SMTEFGWDVK YAGVQTLVAK VLMQGKGGEH 300 TAVFERYQQK AEQFMCSLLG KSTKNIKKTP GGLIFRQSWN NMQFVTSASF LAAVYSDYLS 360 SSKRDLRCSQ GNISPSQLLD FSKSQVDYIL GDNPRATSYM VGYGENYPRQ VHHRGSSIVS 420 FNVDQKFVTC RGGYATWFSR KGSDPNVLTG AIVGGPDAYD NFADQRDNYE QTEPATYNNA 480 PLLGVLARLI SGPTGFDQLL PGVSPTPSPV IIKLAPVPKK KPTTPPVASS PSPITISQKM 540 TLSWKNEGKV YYRYSTRLTN RSTKTLKILK ISITKLYGPI WGVTKTGTSF TFPSWMQSLP 600 AGKSMEFVYI HSAASPADVL VSNYSLE* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02171 | PLN02171 | 0 | 25 | 627 | 603 | + endoglucanase | ||
| PLN02340 | PLN02340 | 0 | 26 | 624 | 604 | + endoglucanase | ||
| PLN02420 | PLN02420 | 0 | 26 | 490 | 467 | + endoglucanase | ||
| PLN00119 | PLN00119 | 0 | 26 | 489 | 464 | + endoglucanase | ||
| pfam00759 | Glyco_hydro_9 | 0 | 26 | 487 | 464 | + Glycosyl hydrolase family 9. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005576 | extracellular region |
| GO:0005975 | carbohydrate metabolic process |
| GO:0030246 | carbohydrate binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC35539.1 | 0 | 1 | 627 | 1 | 625 | contains similarity to glycosyl hydrolases family 9 (Pfam: glycosyl_hydro5.hmm, score: 88.03) [Arabidopsis thaliana] |
| GenBank | AAN31840.1 | 0 | 20 | 626 | 19 | 619 | putative endo-beta-1,4-glucanase [Arabidopsis thaliana] |
| RefSeq | NP_176621.1 | 0 | 20 | 626 | 19 | 619 | AtGH9C2 (Arabidopsis thaliana glycosyl hydrolase 9C2); carbohydrate binding / catalytic/ hydrolase, hydrolyzing O-glycosyl compounds |
| RefSeq | NP_192843.2 | 0 | 1 | 627 | 1 | 626 | AtGH9C3 (Arabidopsis thaliana glycosyl hydrolase 9C3); carbohydrate binding / catalytic/ hydrolase, hydrolyzing O-glycosyl compounds |
| RefSeq | XP_002303645.1 | 0 | 23 | 626 | 24 | 621 | glycosyl hydrolase family 9 [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ksd_A | 0 | 25 | 491 | 3 | 430 | A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus |
| PDB | 1ksc_A | 0 | 25 | 491 | 3 | 430 | A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus |
| PDB | 1ks8_A | 0 | 25 | 491 | 3 | 430 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
| PDB | 2xfg_A | 0 | 21 | 489 | 20 | 459 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
| PDB | 4tf4_B | 0 | 26 | 513 | 5 | 466 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
