| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 491295 |
| Family | CBM22 |
| Protein Properties | Length: 577 Molecular Weight: 64756 Isoelectric Point: 7.3219 |
| Chromosome | Chromosome/Scaffold: 7 Start: 3092876 End: 3095393 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM22 | 46 | 161 | 3.2e-21 |
| IIVNPDLQNGSLGWSQFGNAKVDFRGFGGNKFVVATQRNQSSDSVSQKVYLEKGILYTFSAWLQVSRGKAPVSAVFKKNGEYKYAGSVVAESKCWSMLKG GLTVDESGPADLYFES | |||
| GH10 | 221 | 480 | 0 |
| KKLGFPFGCAVENNILGNQAYQNWFTQRFTVTTFGNEMKWYSTERIRGQEDYSTADAMFSFFKQHGIAVRGHNILWDDPRYQPGWVNSLSRDDLYNAVKR RVFSVVSRYKGQLTGWDVVNENLHFSFFESKLGPKASYNTYAMAHAFDPRTTMFLNEYNTLEQPNDLTSSPARYLGKLRELQSIRVAGKIPLGIGLESHF STPNIPYMRSALDTLGATGLPIWLTEVDVDAPPNVRSKYFEQVLREGHAHPKVKGMVMWT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 577 Download |
| MKLLLLLLAF CCLSLSRCEE KSVPYDYSAT IECLDTPYKP QYSGGIIVNP DLQNGSLGWS 60 QFGNAKVDFR GFGGNKFVVA TQRNQSSDSV SQKVYLEKGI LYTFSAWLQV SRGKAPVSAV 120 FKKNGEYKYA GSVVAESKCW SMLKGGLTVD ESGPADLYFE SENTTVDIWV DSVSLQPFTQ 180 EEWDSHHEQS IDKARKGSVR IRVMNNKGET IPNATISIEQ KKLGFPFGCA VENNILGNQA 240 YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMFS FFKQHGIAVR GHNILWDDPR 300 YQPGWVNSLS RDDLYNAVKR RVFSVVSRYK GQLTGWDVVN ENLHFSFFES KLGPKASYNT 360 YAMAHAFDPR TTMFLNEYNT LEQPNDLTSS PARYLGKLRE LQSIRVAGKI PLGIGLESHF 420 STPNIPYMRS ALDTLGATGL PIWLTEVDVD APPNVRSKYF EQVLREGHAH PKVKGMVMWT 480 GYSPSGCYRM CLTDGNFKNL PTGDVVDKLL REWGGLHSQT TGVTDANGFF EASLFHGDYD 540 LNISHPLTNS KSSYNFTLTP DDSSPKTQPS LFVVRI* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 9.0e-6 | 44 | 164 | 132 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 3.0e-29 | 249 | 449 | 212 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 4.0e-51 | 225 | 479 | 274 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 1.0e-83 | 258 | 506 | 272 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA19866.1 | 0 | 26 | 576 | 119 | 669 | putative protein [Arabidopsis thaliana] |
| EMBL | CAA19866.1 | 0 | 398 | 505 | 2 | 109 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_195109.2 | 0 | 9 | 576 | 10 | 576 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_195110.3 | 0 | 16 | 576 | 16 | 576 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| RefSeq | NP_195112.2 | 0 | 17 | 576 | 17 | 576 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 3e-27 | 227 | 506 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 2g4f_B | 4e-25 | 214 | 479 | 3 | 266 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 2g4f_A | 4e-25 | 214 | 479 | 3 | 266 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 2g3j_A | 4e-25 | 214 | 479 | 3 | 266 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 2g3i_A | 4e-25 | 214 | 479 | 3 | 266 | A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT |
