| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 491296 |
| Family | GH10 |
| Protein Properties | Length: 592 Molecular Weight: 66451 Isoelectric Point: 6.5689 |
| Chromosome | Chromosome/Scaffold: 7 Start: 3096241 End: 3098569 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH10 | 236 | 499 | 0 |
| QNRLGFPFGSAVAQNILGNQAYQNWFTQRFTVTTFENEMKWYSTESVRGIENYTIADAMLRFFKQHDIAVRGHNVVWDHPKYQSKWVTSLSRNDIYNAVK RRVFSVVSRYKGQLAGWDVVNENLHHSFFESKFGPNASNNIFAMAHAIDPRTTMFMNEFYTLEDPTDLKASPAKYLQKLRELQSIRVRGNIPLGIGLESH FSTPNIPYMRSGLDILGATGLPIWLTEIDVKAPSDVQAKYFEQVLREGHAHPHVKGMVMWTAYS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 592 Download |
| MKLLLLLLLA FSGLSLSRCE DIFVPYDYSA TIEASNALLI QSWSLETFCL DTPYKPQYNG 60 GIIVNPDLQN GSLGWSQFGN AKVDFREFGG NKFVVATQRN QSSDSVSQMV YLEKGILYTF 120 SAWLQVSIGK SPVSAVFKIN GEDKHAGSVV AESRCWSMLK GGITVDESGP ADLYFESEDT 180 AVEIWVDSVS LQPFTQKEWN AHQEQSIEKA RKGAVRIRVV NNKGEKIPNA SITIVQNRLG 240 FPFGSAVAQN ILGNQAYQNW FTQRFTVTTF ENEMKWYSTE SVRGIENYTI ADAMLRFFKQ 300 HDIAVRGHNV VWDHPKYQSK WVTSLSRNDI YNAVKRRVFS VVSRYKGQLA GWDVVNENLH 360 HSFFESKFGP NASNNIFAMA HAIDPRTTMF MNEFYTLEDP TDLKASPAKY LQKLRELQSI 420 RVRGNIPLGI GLESHFSTPN IPYMRSGLDI LGATGLPIWL TEIDVKAPSD VQAKYFEQVL 480 REGHAHPHVK GMVMWTAYSP SCYHMCLTDG NFKNLPTGDV VDKLLREWGG LRSQTTGVTD 540 ADGFFEASLF HGDYDLNISH PLANSKAYYN FTLTSDDSSS QTQPSIFVFS V* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 8.0e-5 | 60 | 181 | 133 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 7.0e-30 | 240 | 479 | 254 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 8.0e-48 | 241 | 495 | 274 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 4.0e-79 | 274 | 521 | 272 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA19865.1 | 0 | 48 | 591 | 1 | 544 | putative protein [Arabidopsis thaliana] |
| EMBL | CAA19866.1 | 0 | 49 | 591 | 126 | 669 | putative protein [Arabidopsis thaliana] |
| EMBL | CAA19866.1 | 0 | 414 | 520 | 2 | 109 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_195109.2 | 0 | 1 | 591 | 1 | 576 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_195110.3 | 0 | 17 | 591 | 16 | 576 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 7e-27 | 243 | 521 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1i1x_A | 2e-25 | 234 | 527 | 9 | 303 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1i1w_A | 2e-25 | 234 | 527 | 9 | 303 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 4e-25 | 234 | 527 | 9 | 303 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| PDB | 1k6a_A | 6e-25 | 234 | 527 | 9 | 303 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
