Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 492520 |
Family | GH28 |
Protein Properties | Length: 495 Molecular Weight: 54656.8 Isoelectric Point: 5.9065 |
Chromosome | Chromosome/Scaffold: 7 Start: 8061393 End: 8064222 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 99 | 445 | 0 |
YGGSLLFVPAGRWLTGSFNLTSHFTLFLHRDAVILASQEESDYEVIEPLPSYGRGRDTDGGRFISLLFGSNLTDVVITGENGTIDGQGEPWWGKFKRGEL KYTRPYLIEIMHSDGIQISNLTFLNSPSWHIHPVYSRNIFIQSLTILAPVTVPNTDGINPDSCTNTRIEDCYIVSGDDCIAVKSGWDQYGINYGMPTKQL LIRRLTCISPDSAVIALGSEMSGGIEDVRAEDIVAINSESGIRIKTAIGRGGYVKDVYVRGMTMNTMKYVFWMTGSYGSHPDEHYDPKALPVIQNINYQD MVAENVTMPAQLAGISGDQFTGICISNVTITLSKKPKKVLWNCTDVS |
Full Sequence |
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Protein Sequence Length: 495 Download |
MPTSLSTAGY LLFLLLISYD GGFIGAADAE HDLRATDLHN HRHRRHRSHR RGEEFEYSAI 60 SCRAYSASLD EFGAVGDGVT SNTAAFRDAV SQLSRFADYG GSLLFVPAGR WLTGSFNLTS 120 HFTLFLHRDA VILASQEESD YEVIEPLPSY GRGRDTDGGR FISLLFGSNL TDVVITGENG 180 TIDGQGEPWW GKFKRGELKY TRPYLIEIMH SDGIQISNLT FLNSPSWHIH PVYSRNIFIQ 240 SLTILAPVTV PNTDGINPDS CTNTRIEDCY IVSGDDCIAV KSGWDQYGIN YGMPTKQLLI 300 RRLTCISPDS AVIALGSEMS GGIEDVRAED IVAINSESGI RIKTAIGRGG YVKDVYVRGM 360 TMNTMKYVFW MTGSYGSHPD EHYDPKALPV IQNINYQDMV AENVTMPAQL AGISGDQFTG 420 ICISNVTITL SKKPKKVLWN CTDVSGYTSG VTPQPCQLLP EKQPGTVVPC NFPEDPIPID 480 EVKLQRCYSR RRNM* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 3.0e-17 | 71 | 362 | 307 | + polygalacturonase | ||
PLN02218 | PLN02218 | 5.0e-22 | 66 | 454 | 403 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 6.0e-26 | 65 | 366 | 315 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 4.0e-28 | 129 | 444 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 4.0e-53 | 56 | 362 | 330 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 5.00264e-43 | 66 | 432 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 5.00264e-43 | 66 | 432 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 5.00264e-43 | 66 | 432 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 5.00264e-43 | 66 | 432 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00000000000002 | 111 | 402 | 52 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |