Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 492665 |
Family | PL1 |
Protein Properties | Length: 395 Molecular Weight: 43373.3 Isoelectric Point: 8.6368 |
Chromosome | Chromosome/Scaffold: 7 Start: 8822563 End: 8824708 |
Description | root hair specific 14 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 107 | 314 | 0 |
VIQAKPLWITFAKDMVITLENELMVNSYKTIDGRGAKVEIAYGPCITIQDVTNVIVHGISIHDCKPGKYGMVRSSPTHVGHRQGSDGDAIAIFGSSNVWI DHCYLASCTDGLIDVIHASTGITISNNYFTQHDKVMLLGHNDDFVQDVNMKVTVAFNHFGPGLVERMPRVRRGYAHVANNRYDKWIMYAIGGSADPTIFS EGNYFIAS |
Full Sequence |
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Protein Sequence Length: 395 Download |
MTLFTVSCLL VALFLCQSLV HAVNNGYYGY TPTVANYLPE KPQNIMNPVD SCWRLKSDWA 60 VNRKDLANCV VGFGSSTLGG KKGKLYVVTN PNDNAQNPQP GSLRYGVIQA KPLWITFAKD 120 MVITLENELM VNSYKTIDGR GAKVEIAYGP CITIQDVTNV IVHGISIHDC KPGKYGMVRS 180 SPTHVGHRQG SDGDAIAIFG SSNVWIDHCY LASCTDGLID VIHASTGITI SNNYFTQHDK 240 VMLLGHNDDF VQDVNMKVTV AFNHFGPGLV ERMPRVRRGY AHVANNRYDK WIMYAIGGSA 300 DPTIFSEGNY FIASDKSNSK EVTKREVKGG WNNWRWRTSK DVFKNGAYFV PSGYGSISLP 360 YSSAQRFTVA PGNLVPSLTA DAGPLNCNRN GPCY* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 4.0e-27 | 128 | 311 | 196 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-63 | 128 | 311 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-78 | 120 | 315 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172656.1 | 0 | 3 | 393 | 5 | 384 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | NP_193939.1 | 0 | 1 | 394 | 1 | 394 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | NP_193940.1 | 0 | 1 | 394 | 1 | 394 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002263615.1 | 0 | 30 | 393 | 29 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002518442.1 | 0 | 30 | 393 | 28 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 47 | 383 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 47 | 383 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-16 | 121 | 313 | 56 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000001 | 139 | 311 | 140 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.0000000000006 | 126 | 315 | 73 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |