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Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 492802 |
Family | AA7 |
Protein Properties | Length: 540 Molecular Weight: 60166.9 Isoelectric Point: 9.3235 |
Chromosome | Chromosome/Scaffold: 7 Start: 9589564 End: 9591183 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 77 | 532 | 0 |
RFNTSFTPKPTIIVTPRSDSHVSAAVTCSKTLNFLLKIRSGGHDYEGLSYISDKPFFILDMSNLRDVSVDIADQSAWISAGATLGEVYYRIWEKSKVHGF PAGVCPTVGVGGHVSGGGYGNMLRKFGLSVDNLIDAKIVDVNGQVLDRKAMGEDLFWAICGGGGASFGVVLGYKVKLVPVPETVTVFRVEKYMDSGAVDM VHKWQSVGPKTDRNLFLRMLIQPATRKKVKTVRATVVALFLGRADEVVALLRKEFPELSLKKENCIEMSWFQSALWWDNRVNATQIDPKVFLDRNLDKAN FGKRKSDYVASEIPRDGIESLFKKMIELGKIGLVFNPYGGKMAEVTVNSTPFPHRNKLFKVQYSVTWQENSAEIEKGFLNQANVLYSFMSGFVSKNPRNA YLNYRDVDIGVNNHGANSYEEGEVYGRKYFGDNFDRLVKVKTAVDPDNFFMHEQSI |
Full Sequence |
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Protein Sequence Length: 540 Download |
MIATQTFVSV LFFVLFLISL PFSTFAAPPS SDSTYESFVQ CFSDKTKSPQ TQITDNVFSQ 60 TNPSFSSVLR AYIRNGRFNT SFTPKPTIIV TPRSDSHVSA AVTCSKTLNF LLKIRSGGHD 120 YEGLSYISDK PFFILDMSNL RDVSVDIADQ SAWISAGATL GEVYYRIWEK SKVHGFPAGV 180 CPTVGVGGHV SGGGYGNMLR KFGLSVDNLI DAKIVDVNGQ VLDRKAMGED LFWAICGGGG 240 ASFGVVLGYK VKLVPVPETV TVFRVEKYMD SGAVDMVHKW QSVGPKTDRN LFLRMLIQPA 300 TRKKVKTVRA TVVALFLGRA DEVVALLRKE FPELSLKKEN CIEMSWFQSA LWWDNRVNAT 360 QIDPKVFLDR NLDKANFGKR KSDYVASEIP RDGIESLFKK MIELGKIGLV FNPYGGKMAE 420 VTVNSTPFPH RNKLFKVQYS VTWQENSAEI EKGFLNQANV LYSFMSGFVS KNPRNAYLNY 480 RDVDIGVNNH GANSYEEGEV YGRKYFGDNF DRLVKVKTAV DPDNFFMHEQ SIPTLLSKA* 540 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0277 | GlcD | 2.0e-9 | 67 | 262 | 207 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam01565 | FAD_binding_4 | 1.0e-17 | 86 | 223 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
pfam08031 | BBE | 9.0e-18 | 476 | 533 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 36 | 535 | 5 | 513 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 4dns_B | 0 | 26 | 536 | 1 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 26 | 536 | 1 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 28 | 538 | 4 | 499 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 28 | 538 | 4 | 499 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |