| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 493503 |
| Family | CBM43 |
| Protein Properties | Length: 479 Molecular Weight: 53440.9 Isoelectric Point: 8.6474 |
| Chromosome | Chromosome/Scaffold: 7 Start: 14383201 End: 14385038 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 389 | 472 | 4.7e-25 |
| WCVPVEGANETELEETLRMACAQSNTTCAALAPGRECYEPVSIYWHASYALSSYWAQFRNQSIQCYFNGLAHETTTNPGNDRCK | |||
| GH17 | 42 | 363 | 0 |
| IGINYGRQGNNLPSPYQSINFIKSIKAGHVKLYDADPESLTLLSQTNLYVTITVPNHQITSLSSNQTTADEWVRTNILPYYPQTQIRFVLVGNEILSYNY GNVSANLVPAMRKIVNSLRLHGIHNIKVGTPLAMDSLRSSFPPSNGTFREEITGPVMLPLLKFLNGTNSYFFLNVHPYFRWSKNPMNTSLDFALFQGNST YTDPQTGLVYRNLLDQMLDSVLFAMTKLGYPHMRLAISETGWPNFGDIDETGANILNAATYNRNLIKKMTASPPIGTPSRPGLPIPTFVFSLFNENQKSG PGTQRHWGILHPDGSPIYDIDF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 479 Download |
| MSLLAFFLFT LLVFSSSCCS AARFQGHKYM QRKTMLDLAS KIGINYGRQG NNLPSPYQSI 60 NFIKSIKAGH VKLYDADPES LTLLSQTNLY VTITVPNHQI TSLSSNQTTA DEWVRTNILP 120 YYPQTQIRFV LVGNEILSYN YGNVSANLVP AMRKIVNSLR LHGIHNIKVG TPLAMDSLRS 180 SFPPSNGTFR EEITGPVMLP LLKFLNGTNS YFFLNVHPYF RWSKNPMNTS LDFALFQGNS 240 TYTDPQTGLV YRNLLDQMLD SVLFAMTKLG YPHMRLAISE TGWPNFGDID ETGANILNAA 300 TYNRNLIKKM TASPPIGTPS RPGLPIPTFV FSLFNENQKS GPGTQRHWGI LHPDGSPIYD 360 IDFTGQKPLT GFNPLPKPTN NVPYKGQVWC VPVEGANETE LEETLRMACA QSNTTCAALA 420 PGRECYEPVS IYWHASYALS SYWAQFRNQS IQCYFNGLAH ETTTNPGNDR CKFPSVTL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 4.0e-13 | 389 | 460 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 3.0e-29 | 389 | 473 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 5.0e-143 | 42 | 363 | 323 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM64490.1 | 0 | 15 | 478 | 15 | 476 | beta-1,3-glucanase, putative [Arabidopsis thaliana] |
| GenBank | ABK28569.1 | 0 | 15 | 478 | 15 | 476 | unknown [Arabidopsis thaliana] |
| DDBJ | BAG16366.1 | 0 | 53 | 451 | 1 | 399 | tapetum-specific protein A6 family protein [Brassica rapa var. perviridis] |
| EMBL | CAA49513.1 | 0 | 6 | 478 | 1 | 474 | beta-1,3-glucanase homologue [Brassica napus] |
| RefSeq | NP_193144.1 | 0 | 1 | 478 | 1 | 478 | MEE48 (maternal effect embryo arrest 48); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 42 | 363 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghs_B | 0 | 42 | 363 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 42 | 363 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3f55_D | 0 | 41 | 364 | 1 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3f55_C | 0 | 41 | 364 | 1 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
