Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 493575 |
Family | GT47 |
Protein Properties | Length: 510 Molecular Weight: 57520.1 Isoelectric Point: 9.9697 |
Chromosome | Chromosome/Scaffold: 7 Start: 17850757 End: 17854453 |
Description | xylogalacturonan deficient 1 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 171 | 460 | 0 |
NRFKVWTYTEGEVPLFHDGPVNDIYGIEGQFMDEMCVDGPKSRSRFRADHPEDAHVFFIPFSVAKVIHFVYKPITSVEGFSRARLHRLIEDYVDVVATKH RYWNRSKGGDHFMVSCHDWAPDVIDGNPKLFEKFIRALCNANTSEGFRPNVDVSIPEIYLPKGKLGPSFLGKSPRIRSILAFFAGRSHGEIRKILFKHWK EMDNEVQVYDRLPPGKDYTKTMGMSKFCLCPSGWEVASPREVEAIYAGCVPVIISDNYSLPFSDVLNWDSFSIQIPVSRIPEIKTILQSV |
Full Sequence |
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Protein Sequence Length: 510 Download |
MAAPRSRRCS LSLLTLISIS LILISVSLFV STKPTNKPLI DYRNQFSVSI SSPPSPSPLE 60 QNNTTNTSLS NTTNTSLISA SPPFSHLGQN NTTNTTLASS SSFSDHQNQN KSPSPTSKKV 120 VIKKRSGLDK IESDLAKARA AIKKAASTQN YISSLYKNPA AFHQSHTEMM NRFKVWTYTE 180 GEVPLFHDGP VNDIYGIEGQ FMDEMCVDGP KSRSRFRADH PEDAHVFFIP FSVAKVIHFV 240 YKPITSVEGF SRARLHRLIE DYVDVVATKH RYWNRSKGGD HFMVSCHDWA PDVIDGNPKL 300 FEKFIRALCN ANTSEGFRPN VDVSIPEIYL PKGKLGPSFL GKSPRIRSIL AFFAGRSHGE 360 IRKILFKHWK EMDNEVQVYD RLPPGKDYTK TMGMSKFCLC PSGWEVASPR EVEAIYAGCV 420 PVIISDNYSL PFSDVLNWDS FSIQIPVSRI PEIKTILQSV SLVRYLKMYK RVLEVKQHFV 480 LNRPAKPYDV MHMMLHSIWL RRLNLRLGA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 8.0e-64 | 169 | 460 | 311 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK83577.1 | 0 | 169 | 509 | 1 | 341 | AT5g33290/F19N2_10 [Arabidopsis thaliana] |
GenBank | ABA18105.1 | 0 | 123 | 507 | 27 | 421 | exostosin family protein [Capsella rubella] |
GenBank | ABG48476.1 | 0 | 117 | 507 | 22 | 423 | At3g42180 [Arabidopsis thaliana] |
RefSeq | NP_189804.4 | 0 | 117 | 507 | 67 | 468 | catalytic/ transferase, transferring glycosyl groups [Arabidopsis thaliana] |
RefSeq | NP_198314.2 | 0 | 1 | 509 | 1 | 500 | XGD1 (XYLOGALACTURONAN DEFICIENT 1); UDP-xylosyltransferase/ catalytic [Arabidopsis thaliana] |