Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 493797 |
Family | GH28 |
Protein Properties | Length: 450 Molecular Weight: 48476.9 Isoelectric Point: 7.5852 |
Chromosome | Chromosome/Scaffold: 7 Start: 21217083 End: 21218901 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 75 | 421 | 0 |
NNSSQGTLLHVPRGVYLTQSFNLTSHMTLYLADGAVIKAVQDTGKWRLTDPLPSYGRGRERPGRRYISFIHGDGLNDVVITGRNGTIDGQGEPWWNMWRH GTLEFTRPGLIEFKNSTNIVVSHVVLQNSAFWTLHPVYCSNVVVHHVTILAPTDSFNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYNLPS RDITIRRITGSSPFAGIAIGSETSGGIQNVTVENITLYNSGIGIHIKTNIGRGGSIQGITISGVYLEKVRTGIKISGDTGDHPDDKFNTSALPIVRGITI KNVWGIKVERAGMVQGLKDSPFTNLCFSNVTLTGTKSTPIWKCSDVV |
Full Sequence |
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Protein Sequence Length: 450 Download |
MTLSRAPISV CVLFLLSTVL PHHLSLGAPI TCSGIVPMKH RTEMLSIFDF GAVGDGKTLN 60 TNAFNTAIDR IRNSNNSSQG TLLHVPRGVY LTQSFNLTSH MTLYLADGAV IKAVQDTGKW 120 RLTDPLPSYG RGRERPGRRY ISFIHGDGLN DVVITGRNGT IDGQGEPWWN MWRHGTLEFT 180 RPGLIEFKNS TNIVVSHVVL QNSAFWTLHP VYCSNVVVHH VTILAPTDSF NTDGIDPDSS 240 SNVCIEDSYI STGDDLVAVK SGWDEYGIAY NLPSRDITIR RITGSSPFAG IAIGSETSGG 300 IQNVTVENIT LYNSGIGIHI KTNIGRGGSI QGITISGVYL EKVRTGIKIS GDTGDHPDDK 360 FNTSALPIVR GITIKNVWGI KVERAGMVQG LKDSPFTNLC FSNVTLTGTK STPIWKCSDV 420 VGAASKVNPT PCPELTTTTQ QGGSCENQS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-19 | 44 | 432 | 414 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-23 | 42 | 437 | 411 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 2.0e-28 | 45 | 412 | 378 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-30 | 143 | 425 | 289 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 3.0e-52 | 45 | 357 | 336 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91250.1 | 0 | 13 | 438 | 8 | 434 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
EMBL | CBI34471.1 | 0 | 3 | 447 | 1 | 445 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_194113.1 | 0 | 13 | 438 | 8 | 434 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_199002.1 | 0 | 1 | 449 | 1 | 449 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002509949.1 | 0 | 31 | 448 | 28 | 445 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 3e-37 | 45 | 410 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 3e-37 | 45 | 410 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 3e-37 | 45 | 410 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 3e-37 | 45 | 410 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 5e-20 | 75 | 420 | 34 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |