Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 494222 |
Family | CE8 |
Protein Properties | Length: 363 Molecular Weight: 40228.4 Isoelectric Point: 9.011 |
Chromosome | Chromosome/Scaffold: 8 Start: 141140 End: 148769 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 61 | 352 | 0 |
ITVSINGHARFRSVQDAVDSIPKNNNMSITIKIAPGFYREKVVVPATKPYITFKGAGRDVTAIEWHDRASDLGANGQQLRTYQTASVTVYANYFTARNIS FTNTAPAPLPGMQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIASRFGSIAAHGRTCPEEKTGFA FVGCRVTGTGPLYVGRAMGQYSRIVYAYTYFDALVAHGGWDDWDHKSNKSKTAFFGVYNCYGPGAAATRGVSWARALDYESAHPFIAKSFVN |
Full Sequence |
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Protein Sequence Length: 363 Download |
MAQLTNSLNY LFYVSLLLFV SFHCLCFRFS LVAACSNSTD DQQIQHRHHR KWVGPSGHKV 60 ITVSINGHAR FRSVQDAVDS IPKNNNMSIT IKIAPGFYRE KVVVPATKPY ITFKGAGRDV 120 TAIEWHDRAS DLGANGQQLR TYQTASVTVY ANYFTARNIS FTNTAPAPLP GMQGWQAVAF 180 RISGDKAFFF GCGFYGAQDT LCDDAGRHYF KECYIEGSID FIFGNGRSMY KDCELHSIAS 240 RFGSIAAHGR TCPEEKTGFA FVGCRVTGTG PLYVGRAMGQ YSRIVYAYTY FDALVAHGGW 300 DDWDHKSNKS KTAFFGVYNC YGPGAAATRG VSWARALDYE SAHPFIAKSF VNGRHWIAPR 360 DA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 2.0e-103 | 59 | 359 | 303 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 3.0e-105 | 29 | 362 | 362 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 4.0e-116 | 56 | 357 | 304 | + pectinesterase | ||
PLN02682 | PLN02682 | 4.0e-133 | 36 | 359 | 338 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 0 | 23 | 362 | 340 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD64977.1 | 0 | 1 | 362 | 1 | 360 | pectinesterase family protein [Brassica oleracea] |
GenBank | ABD65006.1 | 0 | 21 | 362 | 6 | 344 | pectinesterase family protein [Brassica oleracea] |
DDBJ | BAB09076.1 | 0 | 1 | 362 | 1 | 359 | pectin methylesterase-like [Arabidopsis thaliana] |
RefSeq | NP_199561.1 | 0 | 1 | 362 | 1 | 362 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002303355.1 | 0 | 47 | 359 | 2 | 314 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 6.00036e-42 | 53 | 357 | 5 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-32 | 63 | 357 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 9e-19 | 58 | 339 | 5 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 9e-19 | 58 | 339 | 5 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 3uw0_A | 9e-19 | 58 | 330 | 32 | 340 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |