Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 494865 |
Family | GH28 |
Protein Properties | Length: 396 Molecular Weight: 42442.9 Isoelectric Point: 9.1264 |
Chromosome | Chromosome/Scaffold: 8 Start: 11294600 End: 11296299 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 45 | 376 | 0 |
NEACQFPTKSTVLIPKGEYKLGEIVMMGPCKAPIRIALQGTVKADGNANGKEKWVAFRNIDGFKLNGGGVFDGEGNAAWRVNNCHKTFNCKKLPISIRFD FVTNAKIRGITSLDAKNFHINVIGAKNMTFEDVKIIAPAESPNTDGIHVGRSDGIKIINSFISTGDDCVSVGDGMKNLLVERVTCGPGHGISIGSLGRYS HEENVSGIKIINCTLQETDNGLRIKTWPSAACTTTASDIHFENILLKNVSNPILIDQEYCPWNQCNKQKPSTIKLANISFKKIRGTSGNKDAVKLLCSKG HPCQNVEVGDINIKYTGADGPATFQCSNVSPK |
Full Sequence |
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Protein Sequence Length: 396 Download |
MGRVHFGVSA FFVFCLLGLS ANAKVFNIGS PPGSDITNAL LKAFNEACQF PTKSTVLIPK 60 GEYKLGEIVM MGPCKAPIRI ALQGTVKADG NANGKEKWVA FRNIDGFKLN GGGVFDGEGN 120 AAWRVNNCHK TFNCKKLPIS IRFDFVTNAK IRGITSLDAK NFHINVIGAK NMTFEDVKII 180 APAESPNTDG IHVGRSDGIK IINSFISTGD DCVSVGDGMK NLLVERVTCG PGHGISIGSL 240 GRYSHEENVS GIKIINCTLQ ETDNGLRIKT WPSAACTTTA SDIHFENILL KNVSNPILID 300 QEYCPWNQCN KQKPSTIKLA NISFKKIRGT SGNKDAVKLL CSKGHPCQNV EVGDINIKYT 360 GADGPATFQC SNVSPKLVGT QIPKACSSPV TKPPK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-74 | 34 | 384 | 359 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-75 | 34 | 388 | 362 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 2.0e-78 | 11 | 386 | 389 | + polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-118 | 34 | 386 | 359 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 7.0e-127 | 48 | 373 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABG38467.1 | 0 | 4 | 394 | 3 | 395 | pollen-expressed protein MF6t [Brassica juncea] |
GenBank | ABN13878.1 | 0 | 5 | 395 | 4 | 395 | polygalacturonase [Brassica rapa subsp. campestris] |
EMBL | CAA05892.1 | 0 | 5 | 389 | 4 | 389 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_187439.1 | 0 | 5 | 389 | 4 | 389 | polygalacturonase 3 (PGA3) / pectinase [Arabidopsis thaliana] |
RefSeq | NP_199625.1 | 0 | 1 | 395 | 1 | 395 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1hg8_A | 1e-16 | 112 | 330 | 78 | 304 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1bhe_A | 0.000000000000002 | 89 | 376 | 93 | 375 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 0.00000000000002 | 135 | 357 | 123 | 344 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 0.00000000000002 | 135 | 357 | 123 | 344 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1nhc_F | 0.00000000000005 | 56 | 373 | 21 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |