y
Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 494953 |
Family | PL1 |
Protein Properties | Length: 412 Molecular Weight: 45886.8 Isoelectric Point: 8.5421 |
Chromosome | Chromosome/Scaffold: 8 Start: 12281794 End: 12286237 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 125 | 330 | 0 |
IQEEPLWIVFKRDMVITLKEELIMNSFKTIDGRGVNVHIANGACITIQFVTNIIIHGIHIHDCRPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWID HNSLSNCADGLIDAVMASTAITISNNYFTHHNEVMLLGHSDTYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQ GNRYLA |
Full Sequence |
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Protein Sequence Length: 412 Download |
MAITQILVLF ASALLLSMFF TGVDSTSEQA VENPEEVAAM VDMSIRNSTE RRKLGYFSCS 60 TGNPIDDCWR CDRRWQSRRK ALANCAIGFG RNAIGGRDGR YYVVSDPNDD NPVNPKPGTL 120 RHAVIQEEPL WIVFKRDMVI TLKEELIMNS FKTIDGRGVN VHIANGACIT IQFVTNIIIH 180 GIHIHDCRPT GNAMVRSSPS HYGWRTMADG DGISIFGSSH IWIDHNSLSN CADGLIDAVM 240 ASTAITISNN YFTHHNEVML LGHSDTYTRD KVMQVTIAYN HFGEGLIQRM PRCRHGYFHV 300 VNNDYTHWEM YAIGGSASPT INSQGNRYLA PRNRFAKEVT KRDYAGQWQW RHWNWRSEGD 360 LFLNGAFFTR SGSGLGASYA RASSLAAKSS SLVGVITYNA GALNCRGGRR C* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 4.0e-27 | 150 | 326 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 7.0e-70 | 143 | 328 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 9.0e-80 | 137 | 332 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM61584.1 | 0 | 1 | 411 | 1 | 416 | putative pectate lyase [Arabidopsis thaliana] |
GenBank | AAM63307.1 | 0 | 1 | 411 | 1 | 417 | pectate lyase [Arabidopsis thaliana] |
DDBJ | BAB10313.1 | 0 | 28 | 411 | 11 | 393 | pectate lyase [Arabidopsis thaliana] |
RefSeq | NP_187357.1 | 0 | 1 | 411 | 1 | 416 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | NP_568705.1 | 0 | 1 | 411 | 1 | 417 | pectate lyase family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 63 | 403 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 63 | 403 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-17 | 132 | 330 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000003 | 153 | 305 | 135 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.000000000004 | 153 | 305 | 151 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |