Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 494984 |
Family | GH28 |
Protein Properties | Length: 448 Molecular Weight: 48295.9 Isoelectric Point: 4.866 |
Chromosome | Chromosome/Scaffold: 8 Start: 12886952 End: 12889677 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 72 | 421 | 0 |
DKGGAQLYVPPGRWLTGSFNLTSHLTLFLEKDAVILASQDPSHWQVADALPSYGRGIDLPGKRYMSLINGDTLHDVVVTGDNGTIDGQGLVWWDRFNSHS LEYSRPHLVEFVSSGNVIVSNLTFLNAPAYTIHSVYCSNLYIHRVTANTSPESPYTIGIVPDSSENVCIQDSSINMGYDAISLKSGWDEYGISYARPTAN VQIKNVYLGAASGSSISFGSEMSGGISDVEVRDAHIHNSLSGISFRTTNGRGGYIKEIDISNIHMVNVGTAFLANGSFGTHPDSGFDANAFPLVSHIRLH DIAGENISTAGYFFGTEESPFTSILLSNISLSIKNSDSPADFWQCSYVDG |
Full Sequence |
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Protein Sequence Length: 448 Download |
MPVALVLLLT LSSVILINGR SYGVGNVCDL GRRPNERPHS VKITDFGAVG DGETLNTLAF 60 QNAVFYLKSF ADKGGAQLYV PPGRWLTGSF NLTSHLTLFL EKDAVILASQ DPSHWQVADA 120 LPSYGRGIDL PGKRYMSLIN GDTLHDVVVT GDNGTIDGQG LVWWDRFNSH SLEYSRPHLV 180 EFVSSGNVIV SNLTFLNAPA YTIHSVYCSN LYIHRVTANT SPESPYTIGI VPDSSENVCI 240 QDSSINMGYD AISLKSGWDE YGISYARPTA NVQIKNVYLG AASGSSISFG SEMSGGISDV 300 EVRDAHIHNS LSGISFRTTN GRGGYIKEID ISNIHMVNVG TAFLANGSFG THPDSGFDAN 360 AFPLVSHIRL HDIAGENIST AGYFFGTEES PFTSILLSNI SLSIKNSDSP ADFWQCSYVD 420 GSSEFVVPEP CLELKSFDSS YGRAEAL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 5.0e-12 | 39 | 267 | 238 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 9.0e-17 | 39 | 436 | 406 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 4.0e-19 | 146 | 375 | 233 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-20 | 36 | 339 | 320 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 2.0e-38 | 41 | 353 | 335 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM65366.1 | 0 | 69 | 444 | 2 | 375 | polygalacturonase-like protein [Arabidopsis thaliana] |
RefSeq | NP_001032043.1 | 0 | 1 | 447 | 1 | 447 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_566292.1 | 0 | 69 | 444 | 2 | 375 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_680409.1 | 0 | 15 | 447 | 17 | 449 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_850525.1 | 0 | 1 | 444 | 1 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 2e-26 | 32 | 399 | 19 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2e-26 | 32 | 399 | 19 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2e-26 | 32 | 399 | 19 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2e-26 | 32 | 399 | 19 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000000000003 | 85 | 420 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |