Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 495263 |
Family | AA3 |
Protein Properties | Length: 586 Molecular Weight: 64581.7 Isoelectric Point: 7.6961 |
Chromosome | Chromosome/Scaffold: 8 Start: 14833841 End: 14836251 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 42 | 581 | 0 |
MFARFDYIVIGGGTSGCSLAATLAQNASVLVLERGGAPYDNPTATDIENFATTLSNTSPNSWSQLFVSEDGVYNTRARVLGGGSVLNAGFYTRAGEEYVK ETEWKSDEVEAAYEWVEKKVAFQPPVMGWQTAFKDGLLEAGEFPYNGFTYDHIYGTKIGGTIFDRAGHRHTAADLLEYANPGNIVVYLHASVHKILFTTK GRPRPKAYGVIFQDANGVIHKAELEKNAMNEVILSAGAIGSPQLLMLSGIGPAAHLTAHGIKPVVLDHPMVGQGMGDNPMNAIFIPSPTPVEVSLIQVVG ITKFESYIEGASGVIFSYSWTRRFFDGVLNYLNEIQTSRTTSTTSPTLSTQSITDFFKSNPLLNATTRAGLILQKIAGPISRGHLELRNTNPDDNPSVRF NYYQEPEDLQICVEGINTIIKVINSKAFSKFKYPDATIHGLLDLMLSVPTNLRPRHITSMFNLKQFCIDTVMTIWHYHGGCQVGRVVDKNYRILGIDSLR VIDGSTFLKSPGTNPQATVMMLGRYMGQRILQERANYRKT |
Full Sequence |
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Protein Sequence Length: 586 Download |
MGLQRLWLFR IIFIVTYISH ASCLPDKAGY YSFMKDATSA PMFARFDYIV IGGGTSGCSL 60 AATLAQNASV LVLERGGAPY DNPTATDIEN FATTLSNTSP NSWSQLFVSE DGVYNTRARV 120 LGGGSVLNAG FYTRAGEEYV KETEWKSDEV EAAYEWVEKK VAFQPPVMGW QTAFKDGLLE 180 AGEFPYNGFT YDHIYGTKIG GTIFDRAGHR HTAADLLEYA NPGNIVVYLH ASVHKILFTT 240 KGRPRPKAYG VIFQDANGVI HKAELEKNAM NEVILSAGAI GSPQLLMLSG IGPAAHLTAH 300 GIKPVVLDHP MVGQGMGDNP MNAIFIPSPT PVEVSLIQVV GITKFESYIE GASGVIFSYS 360 WTRRFFDGVL NYLNEIQTSR TTSTTSPTLS TQSITDFFKS NPLLNATTRA GLILQKIAGP 420 ISRGHLELRN TNPDDNPSVR FNYYQEPEDL QICVEGINTI IKVINSKAFS KFKYPDATIH 480 GLLDLMLSVP TNLRPRHITS MFNLKQFCID TVMTIWHYHG GCQVGRVVDK NYRILGIDSL 540 RVIDGSTFLK SPGTNPQATV MMLGRYMGQR ILQERANYRK TDKEA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 3.0e-12 | 420 | 572 | 158 | + choline dehydrogenase; Validated | ||
TIGR03970 | Rv0697 | 5.0e-26 | 47 | 320 | 317 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
PRK02106 | PRK02106 | 2.0e-29 | 45 | 318 | 330 | + choline dehydrogenase; Validated | ||
COG2303 | BetA | 2.0e-47 | 39 | 576 | 591 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 6 | 575 | 583 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB11043.1 | 0 | 1 | 565 | 1 | 563 | mandelonitrile lyase-like protein [Arabidopsis thaliana] |
EMBL | CAB87405.1 | 0 | 1 | 565 | 1 | 557 | ADHESION OF CALYX EDGES-like protein [Arabidopsis thaliana] |
RefSeq | NP_001119417.1 | 0 | 34 | 585 | 1 | 553 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
RefSeq | NP_200008.1 | 0 | 1 | 585 | 1 | 586 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
RefSeq | NP_567032.1 | 0 | 1 | 584 | 1 | 576 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3gdp_B | 0 | 30 | 576 | 11 | 518 | A Chain A, Crystal Structure Of A Rice Os3bglu6 Beta-glucosidase |
PDB | 3gdp_A | 0 | 30 | 576 | 11 | 518 | A Chain A, Crystal Structure Of A Rice Os3bglu6 Beta-glucosidase |
PDB | 3gdn_B | 0 | 30 | 576 | 11 | 518 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 3gdn_A | 0 | 30 | 576 | 11 | 518 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 1ju2_B | 0 | 30 | 576 | 11 | 518 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |