Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 495409 |
Family | CE8 |
Protein Properties | Length: 588 Molecular Weight: 64188 Isoelectric Point: 7.267 |
Chromosome | Chromosome/Scaffold: 8 Start: 15678169 End: 15680215 |
Description | pectin methylesterase PCR fragment F |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 273 | 570 | 0 |
DITVSKDGSGTFKTIAEAIKKAPEHSSRRFVIYVKSGRYEEENLKVGRKKTNLMFIGDGKGKTVITGGKSIADDLTTFHTATFAATGAGFIVRDITFENY AGPAKHQAVALRVGGDHAVVYRCSIIGYQDALYVHSNRQFFRECEIYGTVDFIFGNAAVILQSCNIYARKPMAQQKITITAQNRKDPNQNTGISIHACKL LATPDLEASKGSYPTYLGRPWKLYSRVVYMMSDMGDHIDPRGWLEWNGPYALDTLYYGEYMNKGPGSGMGQRIKWPGYHVITSMVEASKFTVAQFISG |
Full Sequence |
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Protein Sequence Length: 588 Download |
MGYDRLGPAG PSDPNQTIPA TSVPELQKKT KTKLILFTLA VLVVGVICFG IFAGIRAVDS 60 GKTEPKQTSK PTQAISRTCS KSLYPNLCID TLLDFPGSLT ADENELIHIS FNATLQRFSK 120 ALYTSSTITY TQMPPRVRSA YDSCLELLDD SVDALTRALS SVVVVSGDES HSDVMTWLSS 180 AMTNHDTCTD GFDEIEGQGG EVKDQVIGAV KDLSEMVSNC LAIFAGKVKD LSGVPVVNNR 240 KLLGTEETEE LPNWLKREDR ELLGTPTSAV QADITVSKDG SGTFKTIAEA IKKAPEHSSR 300 RFVIYVKSGR YEEENLKVGR KKTNLMFIGD GKGKTVITGG KSIADDLTTF HTATFAATGA 360 GFIVRDITFE NYAGPAKHQA VALRVGGDHA VVYRCSIIGY QDALYVHSNR QFFRECEIYG 420 TVDFIFGNAA VILQSCNIYA RKPMAQQKIT ITAQNRKDPN QNTGISIHAC KLLATPDLEA 480 SKGSYPTYLG RPWKLYSRVV YMMSDMGDHI DPRGWLEWNG PYALDTLYYG EYMNKGPGSG 540 MGQRIKWPGY HVITSMVEAS KFTVAQFISG SSWLPSTGVA FFSGLSQ* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02506 | PLN02506 | 3.0e-163 | 47 | 586 | 545 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02201 | PLN02201 | 2.0e-164 | 136 | 585 | 457 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 6.0e-176 | 66 | 585 | 524 | + pectinesterase/pectinesterase inhibitor | ||
PLN02484 | PLN02484 | 0 | 1 | 587 | 589 | + probable pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 273 | 571 | 299 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAF42038.1 | 0 | 70 | 586 | 84 | 616 | pectin methylesterase 1 [Pyrus communis] |
RefSeq | NP_200149.1 | 0 | 1 | 587 | 1 | 587 | PMEPCRF (PECTIN METHYLESTERASE PCR FRAGMENT F); pectinesterase [Arabidopsis thaliana] |
RefSeq | XP_002278061.1 | 0 | 70 | 586 | 71 | 596 | PREDICTED: similar to pectin methylesterase 1 [Vitis vinifera] |
RefSeq | XP_002317777.1 | 0 | 54 | 585 | 14 | 550 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002321999.1 | 0 | 1 | 586 | 1 | 604 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 267 | 585 | 2 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 272 | 585 | 3 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 7e-21 | 277 | 543 | 12 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 7e-21 | 277 | 543 | 12 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 7e-21 | 277 | 520 | 12 | 284 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |