y
Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 495658 |
Family | PL1 |
Protein Properties | Length: 392 Molecular Weight: 43389.6 Isoelectric Point: 4.808 |
Chromosome | Chromosome/Scaffold: 8 Start: 17146894 End: 17148669 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 117 | 310 | 0 |
IIFDRDMVIQLKQDLQVASYKTIDGRGNNVQIAYGPCLTLYKVSNVIINNLYIHDCVPAKRNALSSLGGYSDGDGISIFESRDIWIDHCTLEKCYDGLID AVNGSTDITISNSYMLNHNEVMLLGHSDEYSGDRDMRVTIAFNYFGEGLVQRMPRCRHGYFHIVNNIYREWKMYAIGGSANPTIFSQGNVFIAS |
Full Sequence |
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Protein Sequence Length: 392 Download |
MSIVCTIFLF LLTVSSAFAF AVPKPPIVRQ LSTSVTSNST ASCSANGNPI DDCWRCDENW 60 KDNRKNLADC AVGFGRDSIG GRAGEFYTVT DSGDDNPLNP SPGTLRYAAT QDQPLWIIFD 120 RDMVIQLKQD LQVASYKTID GRGNNVQIAY GPCLTLYKVS NVIINNLYIH DCVPAKRNAL 180 SSLGGYSDGD GISIFESRDI WIDHCTLEKC YDGLIDAVNG STDITISNSY MLNHNEVMLL 240 GHSDEYSGDR DMRVTIAFNY FGEGLVQRMP RCRHGYFHIV NNIYREWKMY AIGGSANPTI 300 FSQGNVFIAS NNQFTKEVTK RESADGDEEW KEWNWKSEGD EMVNGAYFTP SGKEDSPSYA 360 KFSSMVARPA SLLKTTHPSV GVLSCEIDQA C* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-28 | 128 | 307 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-55 | 128 | 307 | 202 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-73 | 122 | 311 | 201 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF19195.1 | 0 | 8 | 391 | 4 | 407 | AF206319_1 pectate lyase 1 [Musa acuminata AAA Group] |
EMBL | CBI39737.1 | 0 | 67 | 391 | 2 | 332 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_200383.1 | 0 | 1 | 391 | 1 | 392 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002265729.1 | 0 | 1 | 391 | 1 | 402 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002522747.1 | 0 | 6 | 391 | 3 | 399 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 48 | 355 | 2 | 316 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 48 | 355 | 2 | 316 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-18 | 66 | 309 | 1 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 2e-16 | 126 | 311 | 71 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1vbl_A | 4e-16 | 133 | 307 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |