| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 495867 |
| Family | GH33 |
| Protein Properties | Length: 348 Molecular Weight: 38442.5 Isoelectric Point: 5.0967 |
| Chromosome | Chromosome/Scaffold: 8 Start: 18278857 End: 18281123 |
| Description | BNR/Asp-box repeat family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GH33 | 10 | 310 | 6.2e-31 |
| LETFTFPADSAPFKSCHASTIVEVVEDHFLTAYFGGTTEGAPDVKIWLQHFKDGQWDSPVIVDEEPGVPMWNPVLFKLPSQELLLFYKIGQEVQKWSGCM KRSYDKGRTWTEREQLPPGILGPIKNKPILLEDGTLLCGSSVESWNSWGAWMEVTSDAGRSWRKQGPIYIQGKSLSVIQPVPYQTAAGKLRVLLRSFTGI DKICISESSDGGENWSFAVPTVLPNPNSGIDGVKLKDGRLVLAYNTDSRGVLKVGVSLDDGDSWTDVLTLEESPGMEFSYPAVIQAGDGNVHVTYTYNRT Q | |||
| Full Sequence |
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| Protein Sequence Length: 348 Download |
| MSETDFKVLL ETFTFPADSA PFKSCHASTI VEVVEDHFLT AYFGGTTEGA PDVKIWLQHF 60 KDGQWDSPVI VDEEPGVPMW NPVLFKLPSQ ELLLFYKIGQ EVQKWSGCMK RSYDKGRTWT 120 EREQLPPGIL GPIKNKPILL EDGTLLCGSS VESWNSWGAW MEVTSDAGRS WRKQGPIYIQ 180 GKSLSVIQPV PYQTAAGKLR VLLRSFTGID KICISESSDG GENWSFAVPT VLPNPNSGID 240 GVKLKDGRLV LAYNTDSRGV LKVGVSLDDG DSWTDVLTLE ESPGMEFSYP AVIQAGDGNV 300 HVTYTYNRTQ IKHVVLKTAT DIDSKPYRHR EAGGGHVNLG LYELNIN* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam03404 | Mo-co_dimer | 0.006 | 234 | 283 | 60 | + Mo-co oxidoreductase dimerisation domain. This domain is found in molybdopterin cofactor (Mo-co) oxidoreductases. It is involved in dimer formation, and has an Ig-fold structure. | ||
| cd00260 | Sialidase | 0.001 | 69 | 283 | 248 | + Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases. | ||
| cd00260 | Sialidase | 0.0003 | 109 | 321 | 246 | + Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases. | ||
| COG4692 | COG4692 | 1.0e-29 | 21 | 319 | 351 | + Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism] | ||
| pfam13088 | BNR_2 | 3.0e-99 | 36 | 302 | 282 | + BNR repeat-like domain. This family of proteins contains BNR-like repeats suggesting these proteins may act as sialidases. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM61202.1 | 0 | 1 | 347 | 1 | 347 | unknown [Arabidopsis thaliana] |
| RefSeq | NP_001078763.1 | 0 | 1 | 347 | 12 | 358 | BNR/Asp-box repeat family protein [Arabidopsis thaliana] |
| RefSeq | NP_001154784.1 | 0 | 1 | 347 | 2 | 348 | BNR/Asp-box repeat family protein [Arabidopsis thaliana] |
| RefSeq | NP_568864.2 | 0 | 1 | 347 | 1 | 347 | BNR/Asp-box repeat family protein [Arabidopsis thaliana] |
| RefSeq | NP_851204.1 | 0 | 1 | 347 | 6 | 352 | BNR/Asp-box repeat family protein [Arabidopsis thaliana] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| ES962106 | 261 | 30 | 290 | 0 |
| DK493056 | 244 | 1 | 244 | 0 |
| EV057257 | 236 | 1 | 236 | 0 |
| DK513241 | 232 | 1 | 232 | 0 |
| EV550034 | 233 | 5 | 237 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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