| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 495914 |
| Family | CBM43 |
| Protein Properties | Length: 478 Molecular Weight: 52423.5 Isoelectric Point: 5.9791 |
| Chromosome | Chromosome/Scaffold: 8 Start: 18442441 End: 18444336 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM43 | 362 | 443 | 1.4e-23 |
| WCVMRPNVRLDDPQVAPSVSYACSLGDCTSLGVGTSCANLDGKQNISYAFNSYYQIQDQLDTACKFPNISEVTKTDPSTGTC | |||
| GH17 | 22 | 340 | 0 |
| IGANWGTQASHPLPPDIVVRMLRENGIQKVKLFDAEYDTLRALGKSGIEVMVGIPNEMLATLASSLKAAEKWVAKNVSTHISTDNVNIRYVAVGNEPFLS TYNGSYLSTTFPALRNIQIAIIKAGLQNQVKVTCPLNADVYDSSTTFPSGGDFRANIRDLMITIVKFLSENGGPFTVNIYPFISLYNNPDFPVDYAFFDG NSQPLNDGGTYYYNMFDANYDTLVHALEKNGFGNMPIIIGEIGWPTDGDSNANVDYARKFNQGFMSHISGGKGTPRRPGPIDAYLFSLIDEDAKSVQPGY FERHWGIFTFDGLPKYLLN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 478 Download |
| MGWGSVLLFL AVALLCQRTS SIGANWGTQA SHPLPPDIVV RMLRENGIQK VKLFDAEYDT 60 LRALGKSGIE VMVGIPNEML ATLASSLKAA EKWVAKNVST HISTDNVNIR YVAVGNEPFL 120 STYNGSYLST TFPALRNIQI AIIKAGLQNQ VKVTCPLNAD VYDSSTTFPS GGDFRANIRD 180 LMITIVKFLS ENGGPFTVNI YPFISLYNNP DFPVDYAFFD GNSQPLNDGG TYYYNMFDAN 240 YDTLVHALEK NGFGNMPIII GEIGWPTDGD SNANVDYARK FNQGFMSHIS GGKGTPRRPG 300 PIDAYLFSLI DEDAKSVQPG YFERHWGIFT FDGLPKYLLN LGTTNSGSLI QAKGVRYLQR 360 KWCVMRPNVR LDDPQVAPSV SYACSLGDCT SLGVGTSCAN LDGKQNISYA FNSYYQIQDQ 420 LDTACKFPNI SEVTKTDPST GTCRFPIMIE PYYGGAAREH SFFFPLLMAA AIAVSIF* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 2.0e-7 | 202 | 332 | 142 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-13 | 361 | 427 | 74 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 9.0e-28 | 361 | 445 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 2.0e-79 | 22 | 340 | 321 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3f55_D | 0 | 22 | 341 | 2 | 315 | A Chain A, Structure Of A Transcribing Cypovirus By Cryo-Electron Microscopy |
| PDB | 3f55_C | 0 | 22 | 341 | 2 | 315 | A Chain A, Structure Of A Transcribing Cypovirus By Cryo-Electron Microscopy |
| PDB | 3f55_B | 0 | 22 | 341 | 2 | 315 | A Chain A, Structure Of A Transcribing Cypovirus By Cryo-Electron Microscopy |
| PDB | 3f55_A | 0 | 22 | 341 | 2 | 315 | A Chain A, Structure Of A Transcribing Cypovirus By Cryo-Electron Microscopy |
| PDB | 3em5_D | 0 | 22 | 341 | 2 | 315 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
