y
Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 496502 |
Family | PL1 |
Protein Properties | Length: 411 Molecular Weight: 45498 Isoelectric Point: 6.6839 |
Chromosome | Chromosome/Scaffold: 8 Start: 20872721 End: 20874874 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 126 | 327 | 0 |
PLWIIFKRDMTIQLKEELIMNSFKTLDGRGASVHISGGPCITIQYVTNIIIHGLHIHDCKQGGNTYVRDSPEHYGYRTVSDGDGVSIFGGSHVWVDHCSL SNCNDGLIDAIRGSTAITISNNYLTHHNKVMLLGHSDTYVQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRF LA |
Full Sequence |
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Protein Sequence Length: 411 Download |
MLNSPYLSFT LIFFCCILFS ALTSSLPVSD PELVVEEVHR KINESMSRRK LGFFSCGTGN 60 PIDDCWRCEK DWENNRKRLA DCGIGFGKNA IGGRDGEIYV VTDPGNDDPV NPKPGTLRYA 120 VIQDEPLWII FKRDMTIQLK EELIMNSFKT LDGRGASVHI SGGPCITIQY VTNIIIHGLH 180 IHDCKQGGNT YVRDSPEHYG YRTVSDGDGV SIFGGSHVWV DHCSLSNCND GLIDAIRGST 240 AITISNNYLT HHNKVMLLGH SDTYVQDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN 300 DYTHWEMYAI GGSANPTINS QGNRFLAPDD SSSKEVTKHE DAPENEWRNW NWRSEGDLML 360 NGAFFTYSGA GPTKSSSYSK ASSLAARPSS HVGEITIASG ALSCKRGSHC * 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-27 | 147 | 325 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 7.0e-71 | 140 | 325 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-80 | 134 | 329 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ84042.1 | 0 | 22 | 410 | 30 | 418 | pectate lyase [Malus x domestica] |
DDBJ | BAB10560.1 | 0 | 1 | 410 | 1 | 410 | pectate lyase [Arabidopsis thaliana] |
DDBJ | BAE48664.1 | 0 | 22 | 410 | 26 | 413 | Pectate lyase [Prunus mume] |
RefSeq | NP_568967.1 | 0 | 1 | 410 | 23 | 432 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002322215.1 | 0 | 21 | 410 | 18 | 403 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 60 | 369 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 60 | 369 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 6e-19 | 129 | 326 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jta_A | 0.000000000000003 | 214 | 371 | 151 | 327 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jrg_B | 0.000000000000003 | 214 | 371 | 151 | 327 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |