y
Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 497387 |
Family | GH28 |
Protein Properties | Length: 446 Molecular Weight: 45848.6 Isoelectric Point: 8.2013 |
Chromosome | Chromosome/Scaffold: 286 Start: 7656 End: 9522 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 97 | 425 | 0 |
ACAAGSTITVPKGEYLVESLEFKGPCKGPVTLELNGNLKAPATVKTSKPHSGWIDFENIADFTLNGNGAIFDGQGSLAWKANDCAKTGKCNSLPINIRFT GLTNSKIKSITSTNSKLFHMNILNCKNITLEDIGIDAPPESLNTDGIHIGRSNGVNLLGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRYP NEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGIASNILFEDITMDNVSTPVLIDQEYCPYGHCKAGVPSKVKLSDVTIKNIKGTSATKVAVKLMCSKGV PCTNIALADINLVHNGKEGPAVSACSNIK |
Full Sequence |
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Protein Sequence Length: 446 Download |
MVGFRRASGV LLVVLVVMAT TIVNGTPVVD KAKDAAESVG DKVSEAATTV GDAAASVGVK 60 VPGAKAGGAS LDVKASGAKG DGKTDDSAAF AAAWKEACAA GSTITVPKGE YLVESLEFKG 120 PCKGPVTLEL NGNLKAPATV KTSKPHSGWI DFENIADFTL NGNGAIFDGQ GSLAWKANDC 180 AKTGKCNSLP INIRFTGLTN SKIKSITSTN SKLFHMNILN CKNITLEDIG IDAPPESLNT 240 DGIHIGRSNG VNLLGAKIKT GDDCVSIGDG TENLIVENVE CGPGHGISIG SLGRYPNEQP 300 VKGVTVRKCL IKNTDNGVRI KTWPGSPPGI ASNILFEDIT MDNVSTPVLI DQEYCPYGHC 360 KAGVPSKVKL SDVTIKNIKG TSATKVAVKL MCSKGVPCTN IALADINLVH NGKEGPAVSA 420 CSNIKPILSG KLVPAACTEV AKTGP* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 8.0e-69 | 77 | 434 | 364 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 7.0e-71 | 77 | 437 | 370 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 3.0e-76 | 71 | 437 | 370 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-100 | 102 | 437 | 336 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 5.0e-114 | 72 | 438 | 370 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL32525.1 | 0 | 1 | 445 | 1 | 445 | polygalacturonase; pectinase [Arabidopsis thaliana] |
EMBL | CAA11160.1 | 0 | 1 | 445 | 1 | 445 | polygalacturonase [Arabidopsis thaliana] |
EMBL | CAA51033.1 | 0 | 1 | 445 | 1 | 444 | exopolygalacturonase [Arabidopsis thaliana] |
EMBL | CAA51692.1 | 0 | 1 | 445 | 1 | 445 | exopolygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_188020.1 | 0 | 1 | 445 | 1 | 445 | exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 9e-23 | 127 | 437 | 33 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 9e-23 | 127 | 437 | 33 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 9e-23 | 127 | 437 | 33 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 9e-23 | 127 | 437 | 33 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 9e-23 | 127 | 437 | 33 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |