| Basic Information | |
|---|---|
| Species | Selaginella moellendorffii |
| Cazyme ID | 52668 |
| Family | AA3 |
| Protein Properties | Length: 493 Molecular Weight: 53541.3 Isoelectric Point: 8.7907 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA3 | 10 | 492 | 0 |
| SELEEYDYIIVGGGTAGCPLAATLSEYFKVLVLERGGSPYRNPNITQQSNIANAPRQDPAFQQFTSEDGVANLRANVLGGGSSINGGLYSRAELSFLRQA KLDETTVNKSYAWVEKVVAFEPTYKNAFQSATRTALVTVGGIIPEYNFTYDDVIGTKTAGITFDLNGHRHPSPDLLFEYANPHNILVLLHATVERIIIRN KGTLKITFGVMFKDNIGQTHTAILNEKTGGEVIVCAGALGSPQLLMLSGIGPIEHLKPLGMNLVLNSPQVGKEMRDNPSGVMVLPSPIPLGNFWSPLTVG VASAGFLVETMGLGTSGRLLVKVKGPQSFGELLLKSKNASETPSVRFNYFKSPEDIQRCVAGINTLEEMALSSVFAPYRYDNQTLPSGGTVLLPNRRNSL FLKSINSTIADYCKKNIGTFYHYHGGCLKGEVIDDNYKVIGTNNLRVVDGSTFKSSPGTNPQATVMMLGRYVGTKLLLEKEKK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 493 Download |
| NFIKEASTIS ELEEYDYIIV GGGTAGCPLA ATLSEYFKVL VLERGGSPYR NPNITQQSNI 60 ANAPRQDPAF QQFTSEDGVA NLRANVLGGG SSINGGLYSR AELSFLRQAK LDETTVNKSY 120 AWVEKVVAFE PTYKNAFQSA TRTALVTVGG IIPEYNFTYD DVIGTKTAGI TFDLNGHRHP 180 SPDLLFEYAN PHNILVLLHA TVERIIIRNK GTLKITFGVM FKDNIGQTHT AILNEKTGGE 240 VIVCAGALGS PQLLMLSGIG PIEHLKPLGM NLVLNSPQVG KEMRDNPSGV MVLPSPIPLG 300 NFWSPLTVGV ASAGFLVETM GLGTSGRLLV KVKGPQSFGE LLLKSKNASE TPSVRFNYFK 360 SPEDIQRCVA GINTLEEMAL SSVFAPYRYD NQTLPSGGTV LLPNRRNSLF LKSINSTIAD 420 YCKKNIGTFY HYHGGCLKGE VIDDNYKVIG TNNLRVVDGS TFKSSPGTNP QATVMMLGRY 480 VGTKLLLEKE KKK 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK02106 | PRK02106 | 8.0e-14 | 13 | 100 | 101 | + choline dehydrogenase; Validated | ||
| PRK02106 | PRK02106 | 3.0e-29 | 193 | 478 | 333 | + choline dehydrogenase; Validated | ||
| TIGR01810 | betA | 2.0e-37 | 16 | 478 | 549 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
| COG2303 | BetA | 6.0e-40 | 13 | 479 | 559 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| PLN02785 | PLN02785 | 2.0e-145 | 2 | 482 | 553 | + Protein HOTHEAD | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF88098.1 | 0 | 1 | 493 | 9 | 549 | AC025417_26 T12C24.11 [Arabidopsis thaliana] |
| GenBank | AAL47442.1 | 0 | 1 | 493 | 32 | 572 | At1g12570/T12C24_9 [Arabidopsis thaliana] |
| EMBL | CBI34759.1 | 0 | 1 | 489 | 33 | 571 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002282510.1 | 0 | 3 | 489 | 1 | 537 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002510860.1 | 0 | 2 | 489 | 33 | 570 | glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3red_L | 0 | 1 | 489 | 13 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
| PDB | 3red_K | 0 | 1 | 489 | 13 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
| PDB | 3red_J | 0 | 1 | 489 | 13 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
| PDB | 3red_I | 0 | 1 | 489 | 13 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
| PDB | 3red_H | 0 | 1 | 489 | 13 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
| cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
| suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO796743 | 521 | 16 | 482 | 0 |
| CO080148 | 292 | 1 | 287 | 0 |
| DT559636 | 267 | 1 | 263 | 0 |
| EH720284 | 269 | 2 | 265 | 0 |
| CK271873 | 316 | 15 | 326 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
