| Basic Information | |
|---|---|
| Species | Selaginella moellendorffii |
| Cazyme ID | 54363 |
| Family | GH28 |
| Protein Properties | Length: 392 Molecular Weight: 43567.2 Isoelectric Point: 8.639 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 41 | 374 | 0 |
| QRKNKSSMMLVPSGQVYLVYPVTLKGPCQNNFTLQIDGSVIAPDNRNLWKGFDIQTWILIKRVTNFRLVGTGTIDGKGQNWWMQSCKRNVNEPCRRAPTA LTFRHCQHVEVDGLTITNSQQMHLDLSSCSNAVLRHLTVSSPEDSPNTDGIHLERSESVSIVQTTISTGDDCISIGPGTSHVVIEDVSCGPGHGISIGSL GKKRQSFDRVSHVKVRNAFLRDTQNGLRIKTWEGGRGWAHDFVFEHITMLRVKNPILIDQYYCDHEHSGTCTPKRRGLLISNVKYSDIKGSSASQVAVMF RCNPTNPCHKISLDDVALQYKNSQASSFCQNAYG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 392 Download |
| SSTGRREYEG VFSVDDFGAI GNGIANDTQS FISTWQRACR QRKNKSSMML VPSGQVYLVY 60 PVTLKGPCQN NFTLQIDGSV IAPDNRNLWK GFDIQTWILI KRVTNFRLVG TGTIDGKGQN 120 WWMQSCKRNV NEPCRRAPTA LTFRHCQHVE VDGLTITNSQ QMHLDLSSCS NAVLRHLTVS 180 SPEDSPNTDG IHLERSESVS IVQTTISTGD DCISIGPGTS HVVIEDVSCG PGHGISIGSL 240 GKKRQSFDRV SHVKVRNAFL RDTQNGLRIK TWEGGRGWAH DFVFEHITML RVKNPILIDQ 300 YYCDHEHSGT CTPKRRGLLI SNVKYSDIKG SSASQVAVMF RCNPTNPCHK ISLDDVALQY 360 KNSQASSFCQ NAYGSSARYV LPPTCLLSES KY 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 6.0e-87 | 11 | 386 | 379 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-91 | 45 | 372 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 4.0e-91 | 12 | 385 | 384 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 3.0e-101 | 13 | 382 | 372 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 7.0e-128 | 1 | 392 | 393 | + Probable polygalacturonase | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAU43991.1 | 0 | 3 | 386 | 26 | 407 | unknown protein [Oryza sativa Japonica Group] |
| GenBank | EEC79626.1 | 0 | 3 | 386 | 26 | 407 | hypothetical protein OsI_20838 [Oryza sativa Indica Group] |
| RefSeq | NP_001151886.1 | 0 | 7 | 390 | 29 | 412 | polygalacturonase [Zea mays] |
| RefSeq | NP_565232.1 | 0 | 1 | 392 | 42 | 430 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002517603.1 | 0 | 1 | 386 | 24 | 405 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-18 | 27 | 308 | 21 | 320 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 0.000000000000004 | 113 | 371 | 79 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.000000000000004 | 113 | 371 | 79 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.000000000000004 | 113 | 371 | 79 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 0.000000000000004 | 113 | 371 | 79 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| JZ191937 | 293 | 97 | 386 | 0 |
| JZ196235 | 276 | 114 | 386 | 0 |
| EC945774 | 256 | 115 | 369 | 0 |
| DW479564 | 321 | 19 | 331 | 0 |
| JZ194028 | 299 | 74 | 369 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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