| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 56826.m000027 |
| Family | GH28 |
| Protein Properties | Length: 476 Molecular Weight: 52864.5 Isoelectric Point: 5.5471 |
| Chromosome | Chromosome/Scaffold: 56826 Start: 3555 End: 5859 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 83 | 420 | 0 |
| SDKGGAKLFVPAGRWLTGSFDLISHLTLWLDKNAVILGSTNSDDWPVVDALPSYGRGRELPGGRHRSLIYGRNLTDVVITGDNGTIDGQGSIWWTWFKTE SLNYTRPHLVELMNSSGIVISNLTFINSPFWTIHPVYCSKVIVQNVTIRAPLDSPNTDGIDPDSSDDVCIEDCFISTGDDLIAIKSGWDEYGILYGRPCR NITIRRLVGQTRSSAGIAIGSEMSGGVSEVHAENILFYNSNTGIRIKTSPGRGGYVRNIYVSNVTLNDVNIAIRFTGNYGEHPDEHYDPKALPIIERITI EHVMGDNIKYAGILDGIEADSFVNICLSNISLNVTSKF | |||
| Full Sequence |
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| Protein Sequence Length: 476 Download |
| MLLLVSYDSF PNFSFQLVDL LLVLALFSDV TWHIRGSSHC KRANSADIRP HSVTITEFGA 60 VGDGVTLNTK AFQNAIFYLN SFSDKGGAKL FVPAGRWLTG SFDLISHLTL WLDKNAVILG 120 STNSDDWPVV DALPSYGRGR ELPGGRHRSL IYGRNLTDVV ITGDNGTIDG QGSIWWTWFK 180 TESLNYTRPH LVELMNSSGI VISNLTFINS PFWTIHPVYC SKVIVQNVTI RAPLDSPNTD 240 GIDPDSSDDV CIEDCFISTG DDLIAIKSGW DEYGILYGRP CRNITIRRLV GQTRSSAGIA 300 IGSEMSGGVS EVHAENILFY NSNTGIRIKT SPGRGGYVRN IYVSNVTLND VNIAIRFTGN 360 YGEHPDEHYD PKALPIIERI TIEHVMGDNI KYAGILDGIE ADSFVNICLS NISLNVTSKF 420 PWNCSYIQGY SESVSPEICE PLRESIPPDH YSNCYHLSNY LLNSRNQNRG TWLLSW 480 |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02188 | PLN02188 | 4.0e-24 | 36 | 351 | 331 | + polygalacturonase/glycoside hydrolase family protein |
| PLN02218 | PLN02218 | 8.0e-25 | 50 | 361 | 320 | + polygalacturonase ADPG |
| pfam00295 | Glyco_hydro_28 | 5.0e-28 | 151 | 361 | 216 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| PLN03003 | PLN03003 | 3.0e-30 | 51 | 351 | 311 | + Probable polygalacturonase At3g15720 |
| COG5434 | PGU1 | 7.0e-63 | 53 | 351 | 323 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI37055.1 | 0 | 27 | 476 | 17 | 466 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002273855.1 | 0 | 27 | 476 | 68 | 517 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301554.1 | 0 | 14 | 460 | 4 | 449 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002320934.1 | 0 | 18 | 445 | 1 | 427 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002535132.1 | 0 | 1 | 476 | 1 | 476 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 51 | 411 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 51 | 411 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 51 | 411 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 51 | 411 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 6e-20 | 97 | 427 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FE681628 | 297 | 32 | 328 | 0 |
| CO090976 | 268 | 81 | 348 | 0 |
| HO797483 | 411 | 49 | 457 | 0 |
| GO869614 | 318 | 32 | 349 | 0 |
| CV884789 | 256 | 32 | 287 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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