| Basic Information | |
|---|---|
| Species | Selaginella moellendorffii |
| Cazyme ID | 74934 |
| Family | GH28 |
| Protein Properties | Length: 456 Molecular Weight: 49437.9 Isoelectric Point: 6.7137 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 92 | 432 | 0 |
| GGATLYIPRGKWLTGCFNLTSHMTLFLEQDATILASEDPQDWPVVDPLPSYGRGRELPGKRYTSLLHGLRITDVAITGNNGTIDGQGLIWWNRFRSKTLQ HTRGSLVEFMFSSNILVHNVTLINSPFWTLHPVYTSDVMIKGVTILAPHKAPNTDGVDPDSSSNVCIRDTYISNGDDAVAVKSGWDEYGLAFNRPSHDVF LVNLTVSGSHGISLGSEMSGGIYNVHAYGVSISGAVQGIHIKTSAGRGAYIRNASFASFEILDTGVAFSFTGIYGDHPDAGYNASAFATIENISFRDVVG MRVNRAGDFRGVPQSPFRHTCFTDVALELNGKSNHWNCSYI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 456 Download |
| MELEIHGRVN PATRILLLII ILASPSLFLL GDCSPAIQGC NSVESRLVPG LSRARPRVFS 60 IADFGGVSDG ITLNTKAFQK AIDHIGSFGK LGGATLYIPR GKWLTGCFNL TSHMTLFLEQ 120 DATILASEDP QDWPVVDPLP SYGRGRELPG KRYTSLLHGL RITDVAITGN NGTIDGQGLI 180 WWNRFRSKTL QHTRGSLVEF MFSSNILVHN VTLINSPFWT LHPVYTSDVM IKGVTILAPH 240 KAPNTDGVDP DSSSNVCIRD TYISNGDDAV AVKSGWDEYG LAFNRPSHDV FLVNLTVSGS 300 HGISLGSEMS GGIYNVHAYG VSISGAVQGI HIKTSAGRGA YIRNASFASF EILDTGVAFS 360 FTGIYGDHPD AGYNASAFAT IENISFRDVV GMRVNRAGDF RGVPQSPFRH TCFTDVALEL 420 NGKSNHWNCS YIEGYSRHVS PPPCPELQLE SECWS* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 2.0e-21 | 59 | 334 | 293 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 1.0e-22 | 59 | 441 | 402 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-26 | 159 | 391 | 240 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 9.0e-27 | 53 | 444 | 414 | + Probable polygalacturonase | ||
| COG5434 | PGU1 | 2.0e-53 | 48 | 409 | 403 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU18828.1 | 0 | 53 | 448 | 37 | 432 | unknown [Glycine max] |
| EMBL | CBI37055.1 | 0 | 55 | 447 | 39 | 432 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002273855.1 | 0 | 55 | 447 | 90 | 483 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301554.1 | 0 | 51 | 455 | 35 | 445 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002459610.1 | 0 | 52 | 448 | 53 | 450 | hypothetical protein SORBIDRAFT_02g007470 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2e-35 | 57 | 347 | 26 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2e-35 | 57 | 347 | 26 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2e-35 | 57 | 347 | 26 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2e-35 | 57 | 347 | 26 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 8e-20 | 75 | 389 | 26 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
