| Basic Information | |
|---|---|
| Species | Selaginella moellendorffii |
| Cazyme ID | 78038 |
| Family | GH28 |
| Protein Properties | Length: 456 Molecular Weight: 47694.4 Isoelectric Point: 7.26 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 94 | 422 | 0 |
| NQACKVESSMVEVPANFVFLVKPLVFSGPCQNNLVFQVDGTIVAPTSAKAWNGTSLLQWIEFARVHGLLLQGSCTGAINGNGPAWWNSSCKAKSPAPAQA VRFYGSSNVVVQHLAIVNSPQTHLKFDSCQGVVVNNVTISSPYTSPNTDGIHLQDTRYAAVRSSRVSTGDDCVSIQTGCSNIEIFDMMCGPGHGISIGGL GRGGTKACVSDVSVHDVVVHTSQNGVRIKTWQGGSGSVSSVHFHNIAVLNVSNPIVIDQFYCDGRSCHNQTSGVSISDVSYKNIRGTYTQKSNIHFACSD SVPCVGIVVANVELLSARGYDDIPAFCWN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 456 Download |
| MALWRLVTLV VAFLVVDARS SGRSKYAGGG GGGGGSSSTI GHKSGGDGGG PAAAPEPSNG 60 GYGYYSTNIY DVLSFGAKGD GVTDDTHAFL AAWNQACKVE SSMVEVPANF VFLVKPLVFS 120 GPCQNNLVFQ VDGTIVAPTS AKAWNGTSLL QWIEFARVHG LLLQGSCTGA INGNGPAWWN 180 SSCKAKSPAP AQAVRFYGSS NVVVQHLAIV NSPQTHLKFD SCQGVVVNNV TISSPYTSPN 240 TDGIHLQDTR YAAVRSSRVS TGDDCVSIQT GCSNIEIFDM MCGPGHGISI GGLGRGGTKA 300 CVSDVSVHDV VVHTSQNGVR IKTWQGGSGS VSSVHFHNIA VLNVSNPIVI DQFYCDGRSC 360 HNQTSGVSIS DVSYKNIRGT YTQKSNIHFA CSDSVPCVGI VVANVELLSA RGYDDIPAFC 420 WNSYGEIFSP TVPQVTCLQQ GKPKLGQVQS SYDGC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 4.0e-67 | 63 | 422 | 370 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-68 | 102 | 407 | 308 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03010 | PLN03010 | 9.0e-69 | 62 | 426 | 369 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-77 | 72 | 407 | 341 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-95 | 66 | 450 | 393 | + Probable polygalacturonase | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC79746.1 | 0 | 69 | 455 | 133 | 534 | hypothetical protein OsI_21117 [Oryza sativa Indica Group] |
| GenBank | EEE64806.1 | 0 | 69 | 455 | 133 | 534 | hypothetical protein OsJ_19662 [Oryza sativa Japonica Group] |
| RefSeq | NP_001148771.1 | 0 | 69 | 455 | 142 | 541 | polygalacturonase [Zea mays] |
| RefSeq | XP_002266600.1 | 0 | 55 | 455 | 80 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002521450.1 | 0 | 70 | 444 | 77 | 459 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 4e-23 | 177 | 409 | 133 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 1e-19 | 161 | 391 | 74 | 306 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 1e-19 | 161 | 391 | 74 | 306 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 1e-19 | 161 | 391 | 74 | 306 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1nhc_F | 9e-19 | 171 | 393 | 80 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
