| Basic Information | |
|---|---|
| Species | Selaginella moellendorffii |
| Cazyme ID | 78556 |
| Family | GH28 |
| Protein Properties | Length: 440 Molecular Weight: 47242.5 Isoelectric Point: 4.8585 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 59 | 407 | 0 |
| TATDKGGAMLYVPEGRWLTGSFNLTSHFTLYLERGAVILGSQDPSQWPIIDPLPSYGRGRELPGGRHISLVHGENLEDVVITGENGTIDGQGAKWWRWSK LGLLNHTRGHLVEFVSSTNIIISNVTLVNSPFWTLHPVYCTNVLIQGVTILAPQDSPNTDGIDPDSSSNVCIQDCYISNGDDMIAIKSGWDEYGIAYGQP SSNIHIRRVTGQTKRGAAIAIGSETSGGIENVLVEDLVAVSTKSGVSIRTGVGRGAYIRNVVLSSITLLDIQTAITISGFSSEHPDNGYNATAFPVVEKV TVRGVTGNTLDRPGRILGIPEVPFRDICLEDIALDASTGLTAWKCTDVE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 440 Download |
| MDFLLLALWI AWRSCLVCAI PIGARPHSAS IVDFGAIGDG VTLNTLAFQN AMFYLSSITA 60 TDKGGAMLYV PEGRWLTGSF NLTSHFTLYL ERGAVILGSQ DPSQWPIIDP LPSYGRGREL 120 PGGRHISLVH GENLEDVVIT GENGTIDGQG AKWWRWSKLG LLNHTRGHLV EFVSSTNIII 180 SNVTLVNSPF WTLHPVYCTN VLIQGVTILA PQDSPNTDGI DPDSSSNVCI QDCYISNGDD 240 MIAIKSGWDE YGIAYGQPSS NIHIRRVTGQ TKRGAAIAIG SETSGGIENV LVEDLVAVST 300 KSGVSIRTGV GRGAYIRNVV LSSITLLDIQ TAITISGFSS EHPDNGYNAT AFPVVEKVTV 360 RGVTGNTLDR PGRILGIPEV PFRDICLEDI ALDASTGLTA WKCTDVEGYS SSVTPKICKE 420 LSENNSPDAC PFQLPGTFW* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 1.0e-24 | 134 | 418 | 302 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 7.0e-27 | 24 | 418 | 411 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-33 | 123 | 406 | 292 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 2.0e-34 | 31 | 424 | 418 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 1.0e-60 | 17 | 400 | 424 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU18828.1 | 0 | 9 | 430 | 22 | 440 | unknown [Glycine max] |
| EMBL | CBI37055.1 | 0 | 7 | 439 | 20 | 452 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002273855.1 | 0 | 7 | 439 | 71 | 503 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301554.1 | 0 | 25 | 428 | 39 | 438 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002535132.1 | 0 | 25 | 428 | 49 | 449 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 4.99997e-41 | 27 | 396 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 4.99997e-41 | 27 | 396 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 4.99997e-41 | 27 | 396 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 4.99997e-41 | 27 | 396 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 6e-18 | 14 | 397 | 138 | 534 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
