| Basic Information | |
|---|---|
| Species | Selaginella moellendorffii |
| Cazyme ID | 80819 |
| Family | AA3 |
| Protein Properties | Length: 488 Molecular Weight: 52359.5 Isoelectric Point: 8.3971 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA3 | 18 | 484 | 0 |
| NYDYIIVGGGTAGSPLAATLSSKYKVLVLERGGSPYGNPNITRIENFGAILFGDSPQSPLQVFFSTEGVRNGRARVLGGGSSVNAGVYSHAEQSFITTLG LNPCLVNQSYRWVESVVASIPDQLGPYQTAFRQSLLQAGITPDNNATYDHLVGTKTSGTIFDHSGTRRPASDLFVYANPRNIKILLHATVLRILFLQGVS PKAYGVEFKDKLGRIRKAFLSPKRSSEVILCAGAIASPQLLMLSGIGPGSHLQSKGIKVIKDFPEVGKHMADNPTIYLFVPSPSYVEVSTSLSVGITSFG SYIEGDSGGTLAPNASFLVEKVNGPASMGDLYLATINVDDNPVVSFNYFQEPRDLQVCVAGVDAVEKALLSNAYKPFRYDNQTLPSGGTVISPNRSYSSM GAINSTLADYCKRNVATLYHYHGGCLVNKVVDSNFKVIGVHNLRVVDASVLYISPGTNPQATLMMLG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 488 Download |
| MFSFIQEATD LSSSDLFNYD YIIVGGGTAG SPLAATLSSK YKVLVLERGG SPYGNPNITR 60 IENFGAILFG DSPQSPLQVF FSTEGVRNGR ARVLGGGSSV NAGVYSHAEQ SFITTLGLNP 120 CLVNQSYRWV ESVVASIPDQ LGPYQTAFRQ SLLQAGITPD NNATYDHLVG TKTSGTIFDH 180 SGTRRPASDL FVYANPRNIK ILLHATVLRI LFLQGVSPKA YGVEFKDKLG RIRKAFLSPK 240 RSSEVILCAG AIASPQLLML SGIGPGSHLQ SKGIKVIKDF PEVGKHMADN PTIYLFVPSP 300 SYVEVSTSLS VGITSFGSYI EGDSGGTLAP NASFLVEKVN GPASMGDLYL ATINVDDNPV 360 VSFNYFQEPR DLQVCVAGVD AVEKALLSNA YKPFRYDNQT LPSGGTVISP NRSYSSMGAI 420 NSTLADYCKR NVATLYHYHG GCLVNKVVDS NFKVIGVHNL RVVDASVLYI SPGTNPQATL 480 MMLGRYI* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK02106 | PRK02106 | 1.0e-9 | 342 | 484 | 147 | + choline dehydrogenase; Validated | ||
| PRK02106 | PRK02106 | 4.0e-34 | 19 | 295 | 328 | + choline dehydrogenase; Validated | ||
| TIGR01810 | betA | 2.0e-38 | 20 | 484 | 545 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
| COG2303 | BetA | 1.0e-44 | 18 | 485 | 552 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| PLN02785 | PLN02785 | 8.0e-179 | 2 | 487 | 549 | + Protein HOTHEAD | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN31684.1 | 0 | 2 | 487 | 25 | 563 | unknown [Zea mays] |
| EMBL | CBI31862.1 | 0 | 2 | 487 | 32 | 529 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002298074.1 | 0 | 2 | 487 | 31 | 561 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002454481.1 | 0 | 2 | 487 | 34 | 571 | hypothetical protein SORBIDRAFT_04g031910 [Sorghum bicolor] |
| RefSeq | XP_002510860.1 | 0 | 2 | 487 | 31 | 562 | glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3red_L | 0 | 2 | 487 | 12 | 510 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
| PDB | 3red_K | 0 | 2 | 487 | 12 | 510 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
| PDB | 3red_J | 0 | 2 | 487 | 12 | 510 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
| PDB | 3red_I | 0 | 2 | 487 | 12 | 510 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
| PDB | 3red_H | 0 | 2 | 487 | 12 | 510 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
| cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
| suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO796743 | 517 | 20 | 487 | 0 |
| CK271873 | 309 | 18 | 325 | 0 |
| CO080148 | 292 | 2 | 291 | 0 |
| DT559636 | 266 | 2 | 265 | 0 |
| EL435673 | 271 | 2 | 269 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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