Basic Information | |
---|---|
Species | Selaginella moellendorffii |
Cazyme ID | 81909 |
Family | PL1 |
Protein Properties | Length: 351 Molecular Weight: 38762.8 Isoelectric Point: 8.8128 |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 72 | 269 | 0 |
IFARDMTIVLSQELIVNSHKTIDGRGHAVRIAYGGCLTVQYVRNVIVHGIGIHSCRRTGPAMVRSSPGHVGWRTVSDGDGISIFGSRDVWIDHCFLADCA DGLIDAIMGSTGITISNNYFRDHNKVMLLGHSDSYTLDKMMQVTIAFNHFGEGLVQRMPRCRYGYFHIVNNHYTHWRMYAIGGSANPTINSQGNRFVA |
Full Sequence |
---|
Protein Sequence Length: 351 Download |
TGNPIDDCWR CDPHWHSHRK RLADCAIGFG KNTIGGRDGD FYTVTDSSDD PVNPRPGSLR 60 YGAIQDRPLW IIFARDMTIV LSQELIVNSH KTIDGRGHAV RIAYGGCLTV QYVRNVIVHG 120 IGIHSCRRTG PAMVRSSPGH VGWRTVSDGD GISIFGSRDV WIDHCFLADC ADGLIDAIMG 180 STGITISNNY FRDHNKVMLL GHSDSYTLDK MMQVTIAFNH FGEGLVQRMP RCRYGYFHIV 240 NNHYTHWRMY AIGGSANPTI NSQGNRFVAP ADVNSKQVTK REFAGERSWM KWNWRSEGDS 300 YINGAYFRPS GAGSAAVYAK ASSLPARPAA LVPAMTAFAG PLNCRHHVSC * 360 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-29 | 28 | 267 | 259 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-68 | 83 | 267 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-76 | 76 | 270 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK66161.1 | 0 | 1 | 350 | 18 | 368 | pectate lyase [Fragaria x ananassa] |
GenBank | ABR18471.1 | 0 | 1 | 349 | 91 | 440 | unknown [Picea sitchensis] |
GenBank | ADB90475.1 | 0 | 1 | 350 | 61 | 411 | pectate lyase [Gossypium herbaceum] |
EMBL | CAB36835.1 | 0 | 1 | 350 | 24 | 374 | putative pectate lyase A11 (fragment) [Arabidopsis thaliana] |
RefSeq | NP_567409.1 | 0 | 1 | 350 | 120 | 470 | pectate lyase family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 3 | 340 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 3 | 340 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1vbl_A | 4e-17 | 85 | 288 | 128 | 351 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 3zsc_A | 1e-16 | 72 | 268 | 49 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1bn8_A | 0.000000000000003 | 89 | 244 | 148 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
HO778688 | 352 | 1 | 351 | 0 |
FG606120 | 321 | 1 | 320 | 0 |
CK262438 | 318 | 15 | 331 | 0 |
BQ505865 | 311 | 34 | 344 | 0 |
DY362293 | 269 | 1 | 268 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|