Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 857358 |
Family | GH28 |
Protein Properties | Length: 333 Molecular Weight: 35790.3 Isoelectric Point: 7.5 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 7 | 276 | 0 |
SKISECWLCFEKVTGLVLTGSGVLNSHGENWWSSVGFPSRPEAVRFFGCQNLLYKGLTQINSPRNHISIFGCTNATLSNLHLIAPANSPNTDGIDISHSQ NIHVLSSTINTGDDCVAIKGASYDINITYVTCGPGHGISIGSLGQGGASEVVQNVNVRHCTFSGTQNGARIKTWPGGRGFVKNILYENITLINANFPIII DQQYHQSAGATAVKVSDVTFKSFKGTSADATAIKLDCDPTTGCDNIVMDHINIVSSSPRTPLTSYCKFAH |
Full Sequence |
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Protein Sequence Length: 333 Download |
MAKDWGSKIS ECWLCFEKVT GLVLTGSGVL NSHGENWWSS VGFPSRPEAV RFFGCQNLLY 60 KGLTQINSPR NHISIFGCTN ATLSNLHLIA PANSPNTDGI DISHSQNIHV LSSTINTGDD 120 CVAIKGASYD INITYVTCGP GHGISIGSLG QGGASEVVQN VNVRHCTFSG TQNGARIKTW 180 PGGRGFVKNI LYENITLINA NFPIIIDQQY HQSAGATAVK VSDVTFKSFK GTSADATAIK 240 LDCDPTTGCD NIVMDHINIV SSSPRTPLTS YCKFAHVISR VVSIRIDCDF RNEDSQPASS 300 HPQPSAPSAV SPKPHTQPPL SFPFYTNFNI FL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-62 | 13 | 273 | 274 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 6.0e-67 | 13 | 280 | 280 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 3.0e-69 | 13 | 263 | 258 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 8.0e-80 | 13 | 277 | 274 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03010 | PLN03010 | 2.0e-86 | 3 | 267 | 270 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA22565.1 | 2e-16 | 1 | 47 | 54 | 100 | putative protein [Arabidopsis thaliana] |
EMBL | CAA22565.1 | 0 | 145 | 332 | 103 | 305 | putative protein [Arabidopsis thaliana] |
RefSeq | NP_194963.2 | 0 | 5 | 210 | 113 | 322 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_194964.2 | 0 | 1 | 332 | 1 | 347 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_680757.1 | 0 | 1 | 323 | 62 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 3e-24 | 22 | 243 | 72 | 303 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-24 | 22 | 243 | 72 | 303 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-24 | 22 | 243 | 72 | 303 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-24 | 22 | 243 | 72 | 303 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 3e-24 | 22 | 243 | 72 | 303 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CV536748 | 245 | 3 | 243 | 0 |
EY474520 | 216 | 47 | 262 | 0 |
GT141262 | 200 | 63 | 262 | 0 |
FS942787 | 273 | 8 | 265 | 0 |
GO013888 | 203 | 69 | 266 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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