Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 857360 |
Family | GH28 |
Protein Properties | Length: 329 Molecular Weight: 36121.9 Isoelectric Point: 6.4146 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 59 | 318 | 0 |
TPNGSALVIRKNETYTLQPLIFRGPCVSSKIHIQIDGKLEGPRKPIYWKNTEKKSWLGFRDVEGLVINGSGVLNPHGEAWWKSVSHSKRPTTISFESCTD IIYNGLTQINSPKNHISIYGCTNATLSNLDISAPEDSPNTDGINICLSHKIQILDSSIQTGDDCVAITGGRGGSSDINITGVACGPGHGISIGSLGKDDE TDDIVENVIVRSCSFTGTQNGARIKTWQGGQGLAKNILYENITLIDAGYPIIINQHYFDK |
Full Sequence |
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Protein Sequence Length: 329 Download |
MKDFKTLFSV IIIISYYLEY GEGQKILSIK DFILKTNHTI IDYSQAFHEA WKGLCEDETP 60 NGSALVIRKN ETYTLQPLIF RGPCVSSKIH IQIDGKLEGP RKPIYWKNTE KKSWLGFRDV 120 EGLVINGSGV LNPHGEAWWK SVSHSKRPTT ISFESCTDII YNGLTQINSP KNHISIYGCT 180 NATLSNLDIS APEDSPNTDG INICLSHKIQ ILDSSIQTGD DCVAITGGRG GSSDINITGV 240 ACGPGHGISI GSLGKDDETD DIVENVIVRS CSFTGTQNGA RIKTWQGGQG LAKNILYENI 300 TLIDAGYPII INQHYFDKSN YLKYLLGI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-64 | 27 | 319 | 303 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 7.0e-65 | 72 | 319 | 254 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 8.0e-74 | 24 | 317 | 301 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-81 | 40 | 315 | 276 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 4.0e-88 | 42 | 318 | 277 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_194963.2 | 0 | 1 | 317 | 8 | 324 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_195292.2 | 0 | 4 | 318 | 1 | 310 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_680757.1 | 0 | 45 | 315 | 4 | 273 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002324855.1 | 0 | 1 | 323 | 1 | 319 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 7 | 323 | 8 | 316 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 1e-17 | 115 | 319 | 65 | 269 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-17 | 115 | 319 | 65 | 269 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-17 | 115 | 319 | 65 | 269 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-17 | 115 | 319 | 65 | 269 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 1e-17 | 115 | 319 | 65 | 269 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |