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Basic Information | |
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Species | Selaginella moellendorffii |
Cazyme ID | 85947 |
Family | GH28 |
Protein Properties | Length: 419 Molecular Weight: 45220.8 Isoelectric Point: 5.7492 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 58 | 392 | 0 |
WSAACESNYSVMVIPENGTYLLQPTVFPGPCGLGMKVQLDGVLVAPGFFDWNSTNRRQWLRFQHLDGFTLEGTGTIDGQGESWWEQSCKRNHSNPCHPAP EALTIKSCNSTTVRNLHFVNSQQMHLVFDTGVNIRAIGLNISAPQKSPNTDGIHLHDVQSGFIQDCVIATGDDCISIQTGSSRIHIKNVYCGPGHGISIG SLGKDGSAGNVRAVVVDGAVLNGTTNGLRIKSWQGGRGKVYGVLYQNVRMIGVANPIIIDQYYCDSSVPCLNQTSGVEVSGIVYRNITGTSSTAVAVRFA CSDSVSCHGIVLMDVNLTSVKAKSSVSSFCENAQG |
Full Sequence |
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Protein Sequence Length: 419 Download |
MIILFWTLSR CAELEQWNIL RPRPHPPRRI NYTFYNVLDY GALSDGVSDD SEAFLAAWSA 60 ACESNYSVMV IPENGTYLLQ PTVFPGPCGL GMKVQLDGVL VAPGFFDWNS TNRRQWLRFQ 120 HLDGFTLEGT GTIDGQGESW WEQSCKRNHS NPCHPAPEAL TIKSCNSTTV RNLHFVNSQQ 180 MHLVFDTGVN IRAIGLNISA PQKSPNTDGI HLHDVQSGFI QDCVIATGDD CISIQTGSSR 240 IHIKNVYCGP GHGISIGSLG KDGSAGNVRA VVVDGAVLNG TTNGLRIKSW QGGRGKVYGV 300 LYQNVRMIGV ANPIIIDQYY CDSSVPCLNQ TSGVEVSGIV YRNITGTSST AVAVRFACSD 360 SVSCHGIVLM DVNLTSVKAK SSVSSFCENA QGIAVGENSP QGCFGDEEDE EERASSSI* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 3.0e-89 | 30 | 404 | 379 | + polygalacturonase | ||
PLN02188 | PLN02188 | 4.0e-93 | 31 | 403 | 380 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-99 | 67 | 390 | 324 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-105 | 33 | 401 | 373 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-138 | 37 | 404 | 370 | + Probable polygalacturonase |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA88472.1 | 0 | 28 | 402 | 59 | 432 | polygalacturonase [Cucumis sativus] |
RefSeq | NP_173760.2 | 0 | 28 | 410 | 60 | 442 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002299032.1 | 0 | 28 | 418 | 56 | 446 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317091.1 | 0 | 34 | 396 | 33 | 394 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328587.1 | 0 | 28 | 400 | 57 | 428 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-28 | 127 | 376 | 113 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 9e-18 | 104 | 389 | 54 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 9e-18 | 104 | 389 | 54 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 9e-18 | 104 | 389 | 54 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 9e-18 | 104 | 389 | 54 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FE447258 | 209 | 11 | 219 | 0 |
FE447257 | 195 | 225 | 419 | 0 |
EY133898 | 233 | 137 | 369 | 0 |
EE093402 | 255 | 110 | 364 | 0 |
EE091344 | 250 | 132 | 381 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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