Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 860213 |
Family | GH28 |
Protein Properties | Length: 411 Molecular Weight: 46165.4 Isoelectric Point: 7.8736 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 67 | 392 | 0 |
GSQSTMEIPEGYTFLLQPIEFHGPCKSKKIILSISGNLIAPESPYEWECKKDHCHKWIEFGHINGLHINGHGTLACLKRPRGVVISHSSNVHISNIMVKD SPNFQMSLEDSKWVIVKQLTITADGDSPNTDGIHIQRSQNVIVYESNIRTGDDCISIGDGSKYVNISRISCGPGHGISIGSLGRYGTKETVENVVVRDCT FRETTNGVRIKTWQGGRGHVRNVLFERIKLHGATRPIIIDQFYCPHSQCKNHTRAVEIKNVMYNHIHGTSIKKPFVQLLCSKSVPCRGIFMNDINIRNEN EEEEEKYHKSLSHNDHPSAECINVKG |
Full Sequence |
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Protein Sequence Length: 411 Download |
MANSAMFSTF ILSLTLFHIF QLVQSHYSLY HESKSFNVLN YGAIGDGFSD DSKAFKDAWE 60 DTCNYIGSQS TMEIPEGYTF LLQPIEFHGP CKSKKIILSI SGNLIAPESP YEWECKKDHC 120 HKWIEFGHIN GLHINGHGTL ACLKRPRGVV ISHSSNVHIS NIMVKDSPNF QMSLEDSKWV 180 IVKQLTITAD GDSPNTDGIH IQRSQNVIVY ESNIRTGDDC ISIGDGSKYV NISRISCGPG 240 HGISIGSLGR YGTKETVENV VVRDCTFRET TNGVRIKTWQ GGRGHVRNVL FERIKLHGAT 300 RPIIIDQFYC PHSQCKNHTR AVEIKNVMYN HIHGTSIKKP FVQLLCSKSV PCRGIFMNDI 360 NIRNENEEEE EKYHKSLSHN DHPSAECINV KGESNGVMKP KLGCLEFKRH * 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 8.0e-80 | 35 | 363 | 349 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 5.0e-83 | 6 | 407 | 414 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 7.0e-85 | 34 | 395 | 369 | + polygalacturonase | ||
PLN02188 | PLN02188 | 5.0e-86 | 30 | 401 | 392 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 1.0e-89 | 34 | 400 | 387 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB10216.1 | 0 | 1 | 410 | 1 | 411 | polygalacturonase-like protein [Arabidopsis thaliana] |
EMBL | CBI15274.1 | 0 | 32 | 406 | 22 | 382 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_198807.1 | 0 | 1 | 410 | 1 | 373 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002267133.1 | 0 | 32 | 406 | 22 | 391 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002267182.1 | 0 | 36 | 408 | 26 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-19 | 146 | 309 | 151 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 1e-18 | 32 | 370 | 17 | 346 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 2e-17 | 138 | 335 | 92 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-17 | 138 | 335 | 92 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-17 | 138 | 335 | 92 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |