y
Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 862228 |
Family | CBM43 |
Protein Properties | Length: 491 Molecular Weight: 53969.2 Isoelectric Point: 5.4275 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 371 | 456 | 5.1e-24 |
WCMLNPDGLTFSNNTNQLGDNVNYACTFSDCTALGYGSSCGNLDEVGNASYAFNMYFQVQNQKAEACDFEGLAIITTRNISREQCN | |||
GH17 | 32 | 348 | 0 |
LGVNWGTMATHQLPPKTVVQMLKDNNVRKVKLFDADTNTMVALAGSGIEVMVAIPNDQLKAMGSYNRAKDWVRRNITRFNDDVKIKYVAVGNEPFLTAYN GSFLNLTYPALFNIQKALNEAGVGDFIKATVPLNADVYNSPLENPVPSAGSFRQDIFEEMKLIVNFLAHNKAPFTVNIYPFLSLYLSSDFPFDYAFFNGQ NTVSDNGVIYTNVFDANFDTLLASLKALGHGDMSVIVGEVGWPTDGDKNANIPNAERFYTGLLPKLAANRGTPMRPGYIEVYLFGFIDEDAKSIAPGNFE RHWGIFKYDGQPKFPAD |
Full Sequence |
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Protein Sequence Length: 491 Download |
MSNRRKQSTT VGIFLCITIS TLSLLSGDVS ALGVNWGTMA THQLPPKTVV QMLKDNNVRK 60 VKLFDADTNT MVALAGSGIE VMVAIPNDQL KAMGSYNRAK DWVRRNITRF NDDVKIKYVA 120 VGNEPFLTAY NGSFLNLTYP ALFNIQKALN EAGVGDFIKA TVPLNADVYN SPLENPVPSA 180 GSFRQDIFEE MKLIVNFLAH NKAPFTVNIY PFLSLYLSSD FPFDYAFFNG QNTVSDNGVI 240 YTNVFDANFD TLLASLKALG HGDMSVIVGE VGWPTDGDKN ANIPNAERFY TGLLPKLAAN 300 RGTPMRPGYI EVYLFGFIDE DAKSIAPGNF ERHWGIFKYD GQPKFPADLS GAGQKKILTG 360 AQNVQYLQNQ WCMLNPDGLT FSNNTNQLGD NVNYACTFSD CTALGYGSSC GNLDEVGNAS 420 YAFNMYFQVQ NQKAEACDFE GLAIITTRNI SREQCNFPIQ IGDPTSGHSD HNHRFIGLAL 480 VSMLLLFMAL * 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 1.0e-5 | 224 | 340 | 121 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 6.0e-18 | 370 | 444 | 82 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-28 | 370 | 457 | 90 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 1.0e-77 | 32 | 348 | 320 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_176656.1 | 0 | 33 | 461 | 26 | 452 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | NP_179534.1 | 0 | 29 | 461 | 18 | 448 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | NP_187051.3 | 0 | 1 | 490 | 1 | 491 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | NP_197323.1 | 0 | 1 | 490 | 1 | 488 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002277003.1 | 0 | 11 | 461 | 14 | 453 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 0 | 32 | 345 | 3 | 310 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 3ur8_A | 0 | 32 | 345 | 3 | 310 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 3ur7_B | 0 | 32 | 345 | 3 | 310 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 32 | 345 | 3 | 310 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 4gzj_A | 0 | 32 | 345 | 3 | 310 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |