Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 865133 |
Family | PL1 |
Protein Properties | Length: 413 Molecular Weight: 45816.5 Isoelectric Point: 7.5868 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 133 | 331 | 0 |
IIFKRDMVIRLKKELIITSFKTIDGRGSSVHITNGPCLKIHYAHNIIIHGINIHDCKPGSGGMIKDQPYHTGLYIPSDGDAVAIFGGEHVWIDHCSLSNC DDGLIDAIHGSTAITISNNHMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLA |
Full Sequence |
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Protein Sequence Length: 413 Download |
MFSYSSNCFA YAFLLLLSIG NTVALSSSTL AHVQDPNLVV EEVNRSVFNA SRRSLAYLSC 60 RTGNPIDDCW RCDPNWETNR QRLADCAIGF GKNAIGGRDG RIYVVTDPAN DDPVNPRPGT 120 LRYAVTQEEP LWIIFKRDMV IRLKKELIIT SFKTIDGRGS SVHITNGPCL KIHYAHNIII 180 HGINIHDCKP GSGGMIKDQP YHTGLYIPSD GDAVAIFGGE HVWIDHCSLS NCDDGLIDAI 240 HGSTAITISN NHMTHHDKVM LLGHSDSYTQ DKNMQVTIAF NHFGEGLVQR MPRCRHGYFH 300 VVNNDYTHWE MYAIGGSASP TIYSQGNRFL APNTRFNKEV TKHEDAPESQ WRDWNWRSEG 360 DMLLNGAYFR ESGAGSPSTY ARASSLSARP SSLVGSITTT AGTLSCRRGR RC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-24 | 89 | 329 | 260 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-65 | 144 | 329 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 8.0e-74 | 138 | 333 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_189376.1 | 0 | 1 | 412 | 1 | 412 | pectate lyase family protein [Arabidopsis thaliana] |
Swiss-Prot | Q9LTZ0 | 0 | 1 | 412 | 1 | 409 | PEL11_ARATH RecName: Full=Putative pectate lyase 11; Flags: Precursor |
RefSeq | XP_002300069.1 | 0 | 33 | 412 | 25 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002322215.1 | 0 | 22 | 412 | 16 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526952.1 | 0 | 13 | 412 | 11 | 396 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 64 | 405 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 64 | 405 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-19 | 121 | 331 | 38 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 4e-16 | 142 | 338 | 78 | 296 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 4e-16 | 142 | 338 | 78 | 296 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |