Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 866235 |
Family | GH28 |
Protein Properties | Length: 470 Molecular Weight: 51032.6 Isoelectric Point: 8.7122 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 73 | 425 | 0 |
QMATDGGAQLVVPPGKWLTGSFNLTSHFTLFIQRGATILASQDESEWPVIAPLPSYGKGRDGTGTGRFNSLISGTNLTDVVITGNNGTINGQGQYWWDKF KKKQFKLTRPYLIELLFSKNIQISNITLIDSPSWNIHPVYCNNVIVKSVTVLAPVTVPNTDGINPDSCTNTLIEDCYIVSGDDCIAVKSGWDQYGIKFGM PTQQLSIRRLTCISPKSAGVALGSEMSGGIKDVRIEDVTLTNTESAIRIKTAAGRGAYVKDIFARRITMKTMKYVFWMSGNYNSHPDEGFDPKALPEVTN INYRDMTAENVTMSASLDGIHKDPFTGICISNVTIALADKAKKVQWNCTDVAG |
Full Sequence |
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Protein Sequence Length: 470 Download |
MIRPMFGILV ILAILSFPAI ESRSHQNVVS SGIRFSALNC RKHSAILTDF GAVGDGKTSN 60 TNAFKKAISK LSQMATDGGA QLVVPPGKWL TGSFNLTSHF TLFIQRGATI LASQDESEWP 120 VIAPLPSYGK GRDGTGTGRF NSLISGTNLT DVVITGNNGT INGQGQYWWD KFKKKQFKLT 180 RPYLIELLFS KNIQISNITL IDSPSWNIHP VYCNNVIVKS VTVLAPVTVP NTDGINPDSC 240 TNTLIEDCYI VSGDDCIAVK SGWDQYGIKF GMPTQQLSIR RLTCISPKSA GVALGSEMSG 300 GIKDVRIEDV TLTNTESAIR IKTAAGRGAY VKDIFARRIT MKTMKYVFWM SGNYNSHPDE 360 GFDPKALPEV TNINYRDMTA ENVTMSASLD GIHKDPFTGI CISNVTIALA DKAKKVQWNC 420 TDVAGVTSRV TPEPCSLLPE KKAPAKNEDC AFPSDLIPIE SVVLKKCSL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 3.0e-18 | 49 | 342 | 312 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 4.0e-24 | 80 | 423 | 351 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 3.0e-26 | 47 | 432 | 412 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 2.0e-27 | 47 | 407 | 378 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 7.0e-53 | 47 | 405 | 388 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC63679.1 | 0 | 1 | 468 | 1 | 465 | putative polygalacturonase [Arabidopsis thaliana] |
GenBank | ABE66001.1 | 0 | 1 | 469 | 1 | 416 | glycoside hydrolase family 28 protein/polygalacturonase family protein [Arabidopsis thaliana] |
GenBank | ABK28510.1 | 0 | 1 | 468 | 12 | 476 | unknown [Arabidopsis thaliana] |
RefSeq | NP_179968.2 | 0 | 1 | 468 | 12 | 476 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_190464.1 | 0 | 1 | 469 | 1 | 469 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 47 | 410 | 30 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 47 | 410 | 30 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 47 | 410 | 30 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 47 | 410 | 30 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 8e-20 | 89 | 381 | 52 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |