Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 870469 |
Family | GH28 |
Protein Properties | Length: 367 Molecular Weight: 39814.4 Isoelectric Point: 8.4284 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 156 | 354 | 0 |
PPGDSPNTDGIKMGSCSNIHISNTNIGTGDDCIAILSGTTNLDISNVKCGPGHGISVGSLGKNKDEKDVKDLTVRDVFFNGTSDGIRIKTWESSASKILV SNFVYENIQMIDVGKPINIDQKYCPHPPCEHEQKGESHVQIQDLKLKNIYGTSKNKVAMNLQCSKSFPCKNVELIDINIKHNGLEGGSSTAVCENVDGS |
Full Sequence |
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Protein Sequence Length: 367 Download |
MAYIVFAFKA LCLSLLFIVV ASRSTVRPKV FNVQRHGSKP DGKTDNANAF TSVWSRACRR 60 KSGSSKIYVP KGTFYLGGVE FVGPCKNPIE FIIDGTLLAP ANPSDIKQDT WINFRYINDL 120 SISGSGTLDG QGKQSWPLND CHKNPNCPKL AMVTFPPGDS PNTDGIKMGS CSNIHISNTN 180 IGTGDDCIAI LSGTTNLDIS NVKCGPGHGI SVGSLGKNKD EKDVKDLTVR DVFFNGTSDG 240 IRIKTWESSA SKILVSNFVY ENIQMIDVGK PINIDQKYCP HPPCEHEQKG ESHVQIQDLK 300 LKNIYGTSKN KVAMNLQCSK SFPCKNVELI DINIKHNGLE GGSSTAVCEN VDGSVRGKMV 360 PQHCLN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-70 | 21 | 366 | 393 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 1.0e-71 | 1 | 366 | 407 | + polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-72 | 23 | 362 | 385 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-78 | 65 | 351 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 5.0e-101 | 31 | 364 | 373 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_175003.1 | 0 | 1 | 366 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_179147.1 | 0 | 1 | 366 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_179149.2 | 0 | 1 | 366 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_181560.1 | 0 | 1 | 366 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_193112.2 | 0 | 1 | 366 | 1 | 404 | polygalacturonase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-17 | 157 | 329 | 195 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.0000000000002 | 162 | 351 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.0000000000002 | 162 | 351 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.0000000000002 | 162 | 351 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.0000000000002 | 162 | 351 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |