Basic Information | |
---|---|
Species | Arabidopsis lyrata |
Cazyme ID | 870473 |
Family | GH28 |
Protein Properties | Length: 405 Molecular Weight: 43778.9 Isoelectric Point: 8.5847 |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 56 | 392 | 0 |
RACRRESGRSKIYVPKGTFYLGGVEFVGPCKNPIEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPLNDCHKNPSCPKLAMTMG FAFVNNSNIKDITSLNSKMGHFNFFSVHHFNITGVTIAAPGDSPNTDGIKMGSCSNIHISNTNIGTGDDCIAILSGTTNLDISNVKCGPGHGISVGSLGK NKDEKDVKDLTVRDIVFNGTSDGIRIKTWESSASKILVSNFVYENIQMIDVGKPINIDQKYCPHPPCEHEKKGESHVQIQDLKLKNIYGTSKNKVAVNLQ CSKSFPCKNVELIDINIKHNGLEAGSSTAVCENVDGS |
Full Sequence |
---|
Protein Sequence Length: 405 Download |
MASIAFACKA LCVSLLFIVV ASRPTGRPKV FNVQRHGSKP DGKTDNANAF TSVWSRACRR 60 ESGRSKIYVP KGTFYLGGVE FVGPCKNPIE FIIDGTLLAP ANPSDIKQDT WINFRYINNL 120 SISGSGTLDG QGKQSWPLND CHKNPSCPKL AMTMGFAFVN NSNIKDITSL NSKMGHFNFF 180 SVHHFNITGV TIAAPGDSPN TDGIKMGSCS NIHISNTNIG TGDDCIAILS GTTNLDISNV 240 KCGPGHGISV GSLGKNKDEK DVKDLTVRDI VFNGTSDGIR IKTWESSASK ILVSNFVYEN 300 IQMIDVGKPI NIDQKYCPHP PCEHEKKGES HVQIQDLKLK NIYGTSKNKV AVNLQCSKSF 360 PCKNVELIDI NIKHNGLEAG SSTAVCENVD GSVRGKMVPQ HCLN* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 4.0e-78 | 15 | 404 | 392 | + polygalacturonase | ||
PLN02793 | PLN02793 | 3.0e-78 | 14 | 404 | 402 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-81 | 28 | 400 | 379 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 9.0e-98 | 65 | 389 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-117 | 31 | 402 | 373 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_175003.1 | 0 | 1 | 404 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_179147.1 | 0 | 1 | 404 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_179149.2 | 0 | 1 | 404 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_181560.1 | 0 | 1 | 404 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_193112.2 | 0 | 1 | 404 | 1 | 404 | polygalacturonase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-22 | 109 | 367 | 100 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 1e-16 | 119 | 389 | 69 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-16 | 119 | 389 | 69 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-16 | 119 | 389 | 69 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 1e-16 | 119 | 389 | 69 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |