Basic Information | |
---|---|
Species | Arabidopsis lyrata |
Cazyme ID | 870890 |
Family | GH28 |
Protein Properties | Length: 406 Molecular Weight: 43262.1 Isoelectric Point: 6.1166 |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 57 | 386 | 0 |
DVACASANPTMIIVPKGRFLVGNLVFQGNECKQAPISIRIAGSIVAPGDFRIIAGSEHWISFEDVTDVSIYGGILDAQGTSLWKCKNNGGHNCPTGAKSL MFSGSNNIKINGLTSINSQRFHIVIDKSNNVNIDGVKVSADANSPNTDGIHVESSHSVHITNSRIGTGDDCISIGPGSTDVFIQTIQCGPGHGISIGSLG RAEEEQGVDNVTVSNVDFMGTDNGVRIKTWGKDSNSFARNIVFQHINMKMVKNPIIIDQHYCLDKPCPKQESGVKVSNVRYEDIHGTSNTEVAVLLDCSK DKPCTGIVMDDVNLVSVNRPAQASCDNANG |
Full Sequence |
---|
Protein Sequence Length: 406 Download |
MVYNTSCLIL PLALIFLDFI LISSLAHPIP STLNVLSYGA KPDGSKDSTK AFLAAWDVAC 60 ASANPTMIIV PKGRFLVGNL VFQGNECKQA PISIRIAGSI VAPGDFRIIA GSEHWISFED 120 VTDVSIYGGI LDAQGTSLWK CKNNGGHNCP TGAKSLMFSG SNNIKINGLT SINSQRFHIV 180 IDKSNNVNID GVKVSADANS PNTDGIHVES SHSVHITNSR IGTGDDCISI GPGSTDVFIQ 240 TIQCGPGHGI SIGSLGRAEE EQGVDNVTVS NVDFMGTDNG VRIKTWGKDS NSFARNIVFQ 300 HINMKMVKNP IIIDQHYCLD KPCPKQESGV KVSNVRYEDI HGTSNTEVAV LLDCSKDKPC 360 TGIVMDDVNL VSVNRPAQAS CDNANGLAND VVPFTPCLKS EIIMT* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 9.0e-92 | 60 | 384 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 8.0e-92 | 33 | 400 | 375 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 9.0e-93 | 30 | 385 | 362 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 8.0e-102 | 32 | 384 | 361 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 9.0e-112 | 33 | 398 | 368 | + polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC64184.1 | 0 | 9 | 398 | 7 | 393 | endopolygalacturonase [Prunus persica] |
GenBank | ABD33834.1 | 0 | 9 | 398 | 7 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
GenBank | ABV32553.1 | 0 | 9 | 398 | 7 | 393 | endopolygalacturonase [Prunus persica] |
RefSeq | NP_181914.1 | 0 | 1 | 405 | 1 | 405 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002529090.1 | 0 | 12 | 398 | 12 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-18 | 111 | 372 | 98 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 1e-16 | 119 | 381 | 68 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-16 | 119 | 381 | 68 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-16 | 119 | 381 | 68 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-16 | 119 | 381 | 68 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |