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Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 872183 |
Family | GH28 |
Protein Properties | Length: 440 Molecular Weight: 48424 Isoelectric Point: 8.3797 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 93 | 428 | 0 |
WEAACSSTGIVYVVVPNNRDYMLKSVTFSGPCKSTLIIFKIYGMIEAWKNPSDYKERRHWIVFENVDNLRVEGGGRIDGNGHIWWPNSCKINPQLPCLGA PTAVTFVECNNLRVSNIRLENAQQMHLTFQDCKNVKALNLMVTSPADSPNTDGIHVTGTQNILIQDSIVRTGDDCISIVSGSENVRATGITCGPGHGISI GSLGEDNSEAYVSNVVVNKATLIGTTNGVRIKTWQGGHGMAKNIIFQDIIMKNVTNPIIINQDYCDRVESCPEQKSAVQVSNVLYKNIQGTSSRPIAVKF VCSKSIPCRGISMQNVKLVDQTQQDVSTASCSNVKL |
Full Sequence |
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Protein Sequence Length: 440 Download |
MYEKIIIISV FLLTFLPSCF SSYPFNHRDD LFMSSNVYYE TNRQHQHGHN TRNSHLKNRH 60 GYAPGSSPRA FNVNTFGAKA NGNDDSKAFM KAWEAACSST GIVYVVVPNN RDYMLKSVTF 120 SGPCKSTLII FKIYGMIEAW KNPSDYKERR HWIVFENVDN LRVEGGGRID GNGHIWWPNS 180 CKINPQLPCL GAPTAVTFVE CNNLRVSNIR LENAQQMHLT FQDCKNVKAL NLMVTSPADS 240 PNTDGIHVTG TQNILIQDSI VRTGDDCISI VSGSENVRAT GITCGPGHGI SIGSLGEDNS 300 EAYVSNVVVN KATLIGTTNG VRIKTWQGGH GMAKNIIFQD IIMKNVTNPI IINQDYCDRV 360 ESCPEQKSAV QVSNVLYKNI QGTSSRPIAV KFVCSKSIPC RGISMQNVKL VDQTQQDVST 420 ASCSNVKLDT RGNVSPLCT* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 3.0e-95 | 66 | 427 | 367 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 2.0e-107 | 65 | 436 | 376 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 5.0e-114 | 97 | 427 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 9.0e-137 | 66 | 436 | 374 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-144 | 67 | 439 | 376 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC26512.1 | 0 | 12 | 438 | 15 | 458 | polygalacturonase precursor [Cucumis melo] |
GenBank | AAF21207.1 | 0 | 1 | 439 | 1 | 438 | AC013483_31 putative polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_187454.2 | 0 | 1 | 439 | 1 | 439 | QRT2 (QUARTET 2); polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002313308.1 | 0 | 63 | 439 | 1 | 376 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517823.1 | 0 | 54 | 438 | 63 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-22 | 160 | 416 | 110 | 368 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 5e-18 | 146 | 423 | 55 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-18 | 146 | 423 | 55 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-18 | 146 | 423 | 55 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 5e-18 | 146 | 423 | 55 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |