Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 872478 |
Family | GH85 |
Protein Properties | Length: 706 Molecular Weight: 79795.3 Isoelectric Point: 6.0714 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH85 | 76 | 359 | 0 |
MKGGYVDDKWVQGCENDAGFAIWHWYLMDIFVYFSHSLVTLPPPCWTNTAHRHGVKVLGTFITEWDEGKATCKEMLATKESAQMYAERLAELATALGFDG WLINIENDIDEEQIPNLKEFVSHLKKVLQKKSCIYLHLGRWYDSVTIHGNLQWQDQLTELNKPFFDLCDGIFMNYTWKESYPKLSAEVAGDRKFDIYMGI DVFGRGSFGGGQWTVNAALDLLKRSNVSAAMFAPGWVYETAQPPNFHTAQNKWWSIVEKSWGIVQTYPQVLPFYSDFNQGFGYH |
Full Sequence |
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Protein Sequence Length: 706 Download |
MPKSNDADVA ESEAVPLLDL AKPSLPISFP IKSLQDLKSR SYFVSFHFQF NRSTVPLRRD 60 SDDLPNRPRV LVCHDMKGGY VDDKWVQGCE NDAGFAIWHW YLMDIFVYFS HSLVTLPPPC 120 WTNTAHRHGV KVLGTFITEW DEGKATCKEM LATKESAQMY AERLAELATA LGFDGWLINI 180 ENDIDEEQIP NLKEFVSHLK KVLQKKSCIY LHLGRWYDSV TIHGNLQWQD QLTELNKPFF 240 DLCDGIFMNY TWKESYPKLS AEVAGDRKFD IYMGIDVFGR GSFGGGQWTV NAALDLLKRS 300 NVSAAMFAPG WVYETAQPPN FHTAQNKWWS IVEKSWGIVQ TYPQVLPFYS DFNQGFGYHV 360 SLEGRQLSDA PWYNISYQSL QPLLEFNEED NKDIIHVTVD KKGKMFLTIL SKHLNNYYEF 420 DSAREASFNG GGNIAFRGKL KGDAYFTTRL FKPHLQLSSS PITISYSVKS DETSKLGILL 480 SFSSPSQETK SILVAPQDSI RRFNGMFSQC LATSAQTVSE WTVHETSLVM DGHTLTEISA 540 FCYRPDNSTK SAEYVALLGH ISIKDHVQSQ HKPETLLPAS PWVIEAHNIE LVQGNSGSKS 600 LRVKLEWRQK DLEDSAFPKY NVYAENVKST DLRSRKVLEK PISETVFLGV AHVPAYYVGE 660 LVVESDVKGV RFVVQACGKD GSWANLDDSP KLLVELEGLS FQDSS* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
cd00598 | GH18_chitinase-like | 0.0008 | 78 | 250 | 186 | + The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are included in this alignment model. |
COG4724 | COG4724 | 5.0e-32 | 50 | 481 | 470 | + Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism] |
pfam03644 | Glyco_hydro_85 | 1.0e-111 | 76 | 359 | 303 | + Glycosyl hydrolase family 85. Family of endo-beta-N-acetylglucosaminidases. These enzymes work on a broad spectrum of substrates. |
cd06547 | GH85_ENGase | 3.0e-127 | 71 | 391 | 344 | + Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment model. |
Gene Ontology | |
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GO Term | Description |
GO:0005737 | cytoplasm |
GO:0033925 | mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_187715.1 | 0 | 1 | 700 | 1 | 697 | glycosyl hydrolase family 85 protein [Arabidopsis thaliana] |
RefSeq | NP_196165.3 | 0 | 21 | 700 | 16 | 671 | hydrolase, acting on glycosyl bonds / mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase [Arabidopsis thaliana] |
RefSeq | XP_002273683.1 | 0 | 10 | 698 | 8 | 689 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315137.1 | 0 | 24 | 698 | 26 | 698 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315138.1 | 0 | 16 | 698 | 19 | 695 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3fha_D | 1e-26 | 99 | 478 | 83 | 460 | A Chain A, Structure Of Endo-Beta-N-Acetylglucosaminidase A |
PDB | 3fha_C | 1e-26 | 99 | 478 | 83 | 460 | A Chain A, Structure Of Endo-Beta-N-Acetylglucosaminidase A |
PDB | 3fha_B | 1e-26 | 99 | 478 | 83 | 460 | A Chain A, Structure Of Endo-Beta-N-Acetylglucosaminidase A |
PDB | 3fha_A | 1e-26 | 99 | 478 | 83 | 460 | A Chain A, Structure Of Endo-Beta-N-Acetylglucosaminidase A |
PDB | 3fhq_F | 2e-26 | 99 | 478 | 83 | 460 | A Chain A, Structure Of Endo-Beta-N-Acetylglucosaminidase A |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EV160308 | 249 | 118 | 366 | 0 |
EY940981 | 264 | 281 | 544 | 0 |
EL437937 | 259 | 95 | 353 | 0 |
EV118225 | 239 | 104 | 342 | 0 |
JG621224 | 274 | 120 | 392 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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