y
Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 877129 |
Family | GH28 |
Protein Properties | Length: 466 Molecular Weight: 50541.9 Isoelectric Point: 4.9209 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 89 | 418 | 0 |
MACSAPNSVLLVPQGRSYLVNATKFDGPCQEKLIIQIDGTIVAPDEPSQWDPKFQRVWLQFSKLQGVVFQGNGVIDGSGTKWWAASCKKNKSNPCVGAPT ALTIYSSSNVYVRDLTIRNSQQMHLIIARSNTVRISRVMVTSPGDSPNTDGIHITASTDVVVQDSKISTGDDCVSIVNGSAKIKMKRIYCGPGHGISIGS LGQGHSTGTVTAVVLDTAFLKNTTNGLRIKTWQGGNGYVKGVRFENVVMQDVANPIIIDQFYCDSPSTCQNQTSAVHISEIMYRNITGTTKSAKAIKFAC SDAVPCSHIVLNNVNLEGNDGKVEAYCNSA |
Full Sequence |
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Protein Sequence Length: 466 Download |
MNKPFIVSLF ALLMVASYGK TFYRELDILE KLENLDVPED EIEDDVTFFD FSSFTSQYSG 60 KNLVNVDSFG AAGDGVSDDT QAFISAWTMA CSAPNSVLLV PQGRSYLVNA TKFDGPCQEK 120 LIIQIDGTIV APDEPSQWDP KFQRVWLQFS KLQGVVFQGN GVIDGSGTKW WAASCKKNKS 180 NPCVGAPTAL TIYSSSNVYV RDLTIRNSQQ MHLIIARSNT VRISRVMVTS PGDSPNTDGI 240 HITASTDVVV QDSKISTGDD CVSIVNGSAK IKMKRIYCGP GHGISIGSLG QGHSTGTVTA 300 VVLDTAFLKN TTNGLRIKTW QGGNGYVKGV RFENVVMQDV ANPIIIDQFY CDSPSTCQNQ 360 TSAVHISEIM YRNITGTTKS AKAIKFACSD AVPCSHIVLN NVNLEGNDGK VEAYCNSAEG 420 FGYGVVHPSA DCLYSHDDKG LNQTHEYLAE TVMIRDETGD VYDEL* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 4.0e-89 | 58 | 433 | 384 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 4.0e-91 | 58 | 409 | 355 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-99 | 91 | 418 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 8.0e-118 | 64 | 428 | 368 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-146 | 59 | 430 | 374 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC98004.1 | 0 | 19 | 446 | 22 | 446 | Similar to gb |
RefSeq | NP_173760.2 | 0 | 19 | 446 | 23 | 449 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_177207.1 | 0 | 1 | 465 | 1 | 468 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002317091.1 | 0 | 28 | 437 | 1 | 407 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525360.1 | 0 | 1 | 458 | 1 | 492 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-24 | 159 | 379 | 115 | 338 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 5e-19 | 155 | 415 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-19 | 155 | 415 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-19 | 155 | 415 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 5e-19 | 155 | 415 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |