Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 877955 |
Family | GH28 |
Protein Properties | Length: 405 Molecular Weight: 44335.2 Isoelectric Point: 10.1811 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 59 | 390 | 0 |
KEACQWKGYPRVYVPFGTFYLGAVTFTGPCKSRISFIIKGTLLAPKDPNAIKQDTWIIFRYVDYLTVSGGGILDGQGSYSWPLNNCHKTLYCRALPMNMG FQFVRFSRLSRIKSINSKMGHFNFFAVQYFDITRVRIMAPGDSPNTDGIKIGSSNHMKIHHVDIGTGDDCIAILSGTTNLDIYNVKCGPGHGISVGSLGK FKGEKSVQGLTVRDSIFNGTSNGVRIKTWASPGSPNLVSNFLYKNLQMINVENPINIDQRYCPNPPCSLKSFSQIQIKDVKFNNIWGTSTNKVAVKLQCS KNVPCKNVELFNVNLVHRGRDGPAISLCENVA |
Full Sequence |
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Protein Sequence Length: 405 Download |
MVSIISGFKL ILFIAAVASI ISAATSATLA GRKVFDVRSY GARGDGKTDN AIAFTKAWKE 60 ACQWKGYPRV YVPFGTFYLG AVTFTGPCKS RISFIIKGTL LAPKDPNAIK QDTWIIFRYV 120 DYLTVSGGGI LDGQGSYSWP LNNCHKTLYC RALPMNMGFQ FVRFSRLSRI KSINSKMGHF 180 NFFAVQYFDI TRVRIMAPGD SPNTDGIKIG SSNHMKIHHV DIGTGDDCIA ILSGTTNLDI 240 YNVKCGPGHG ISVGSLGKFK GEKSVQGLTV RDSIFNGTSN GVRIKTWASP GSPNLVSNFL 300 YKNLQMINVE NPINIDQRYC PNPPCSLKSF SQIQIKDVKF NNIWGTSTNK VAVKLQCSKN 360 VPCKNVELFN VNLVHRGRDG PAISLCENVA GWTRGKISPP SCIR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-83 | 37 | 399 | 369 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 1.0e-87 | 34 | 403 | 372 | + polygalacturonase | ||
PLN02793 | PLN02793 | 8.0e-90 | 32 | 402 | 379 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-94 | 72 | 402 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 6.0e-120 | 35 | 402 | 370 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71796.1 | 0 | 1 | 404 | 1 | 412 | AC013430_5 F3F9.9 [Arabidopsis thaliana] |
RefSeq | NP_173158.1 | 0 | 4 | 403 | 8 | 401 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_175003.1 | 0 | 1 | 403 | 1 | 403 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_177961.2 | 0 | 1 | 404 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_180874.1 | 0 | 10 | 402 | 7 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-16 | 127 | 338 | 115 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000000000000002 | 123 | 389 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000002 | 123 | 389 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000002 | 123 | 389 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000000002 | 123 | 389 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |