y
Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 881338 |
Family | PL1 |
Protein Properties | Length: 369 Molecular Weight: 40265.3 Isoelectric Point: 9.9795 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 106 | 288 | 0 |
FARDMVIVLKSELMVNSYKTIDGRGAKVEIANGPCLRIKQVSHVIIHGISIHDCKPGSKGWDGDGIRVFQSTHVWIDHCFFSRCQDGLIDVILSSTAITI SNNYFTQHDKVILLGHDDNYMGDKIMRVTIAFNTFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSANPIIFSEGNYFVA |
Full Sequence |
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Protein Sequence Length: 369 Download |
MASLVLTVSL LLATFASSLV ETAHSNNVTI PRVSLNVIDA CWRRNPNWAT NRQALAHCAV 60 GYGKAAVGGK HGPIYVVTNP SDNPTSPSPG TLRFAVTQPK PLWITFARDM VIVLKSELMV 120 NSYKTIDGRG AKVEIANGPC LRIKQVSHVI IHGISIHDCK PGSKGWDGDG IRVFQSTHVW 180 IDHCFFSRCQ DGLIDVILSS TAITISNNYF TQHDKVILLG HDDNYMGDKI MRVTIAFNTF 240 GPGLIERMPR VRRGYAHVAN NRYEKWQMYA IGGSANPIIF SEGNYFVAPD KASNKQVTKR 300 MGAGPDSKRW KWGTAKDVFM NGAFFVPSGG IVRPLYKAGE GFQVAHGSLV PSLTSSAGPL 360 RCYAGRIC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-26 | 115 | 286 | 187 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-53 | 115 | 286 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-76 | 109 | 290 | 193 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK28424.1 | 0 | 21 | 368 | 21 | 368 | unknown [Arabidopsis thaliana] |
RefSeq | NP_172656.1 | 0 | 1 | 368 | 1 | 384 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | NP_174324.1 | 0 | 21 | 368 | 21 | 368 | pectate lyase family protein [Arabidopsis thaliana] |
Swiss-Prot | O65388 | 0 | 1 | 368 | 1 | 390 | PEL2_ARATH RecName: Full=Putative pectate lyase 2; Flags: Precursor |
RefSeq | XP_002518442.1 | 0 | 35 | 368 | 43 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 36 | 358 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 36 | 358 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-21 | 110 | 288 | 56 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 4e-18 | 118 | 286 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.00000000000008 | 115 | 287 | 73 | 277 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |