Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 882030 |
Family | GH28 |
Protein Properties | Length: 405 Molecular Weight: 44090.3 Isoelectric Point: 8.5402 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 57 | 392 | 0 |
ACTRISGSSKIYVPKGTFYLGGVEFVGPCKNPIEFVIDGTLLAPANPRDIKLDTWINFRYINNLSISGSGTLDGQGKHSWPLNDCHKNTNCPKLAMTMGF AFVNNSRIKDITSLNSKMGHFNFFSVHHFNITGITITAPGDSPNTDGIKMGSCSNIHISNTHIGTGDDCIAILSGTTNLDISNVECGPGHGISVGSLGKN KDEKDVKDLTVRDTVFNGTSDGIRIKTWESSASKILVSNFVYENIQMIDVGKPINIDQKYCPHPPCEHEQKGESHVQIQDIKLKNIYGTSKNKVAVNLQC SKSFPCKNVELIDINLKHNGLEDGPSTAVCENINGS |
Full Sequence |
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Protein Sequence Length: 405 Download |
MSFIASAFKA LCLSLLFVVA ASRLTMRPKV FNVRRHGSKP DGKTDNANAF TSVWKRACTR 60 ISGSSKIYVP KGTFYLGGVE FVGPCKNPIE FVIDGTLLAP ANPRDIKLDT WINFRYINNL 120 SISGSGTLDG QGKHSWPLND CHKNTNCPKL AMTMGFAFVN NSRIKDITSL NSKMGHFNFF 180 SVHHFNITGI TITAPGDSPN TDGIKMGSCS NIHISNTHIG TGDDCIAILS GTTNLDISNV 240 ECGPGHGISV GSLGKNKDEK DVKDLTVRDT VFNGTSDGIR IKTWESSASK ILVSNFVYEN 300 IQMIDVGKPI NIDQKYCPHP PCEHEQKGES HVQIQDIKLK NIYGTSKNKV AVNLQCSKSF 360 PCKNVELIDI NLKHNGLEDG PSTAVCENIN GSIRGKMVPQ HCLD* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 2.0e-80 | 29 | 403 | 383 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 2.0e-82 | 30 | 404 | 378 | + polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-82 | 23 | 400 | 385 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-99 | 58 | 389 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-121 | 31 | 402 | 373 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_175003.1 | 0 | 1 | 404 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_175004.1 | 0 | 1 | 396 | 1 | 396 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_175005.1 | 0 | 1 | 396 | 1 | 396 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_179149.2 | 0 | 1 | 404 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_181560.1 | 0 | 1 | 404 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-21 | 109 | 367 | 100 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.000000000000005 | 119 | 389 | 69 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000000005 | 119 | 389 | 69 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000000000005 | 119 | 389 | 69 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.000000000000005 | 119 | 389 | 69 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |