Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 884179 |
Family | GH28 |
Protein Properties | Length: 347 Molecular Weight: 37454.1 Isoelectric Point: 5.1765 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 6 | 322 | 0 |
GDTKTILVPSSQTFLLQPLQFQGPCGSSPVFQMDGEIVAPSDESLWLNLDQKSKKWISFSNVNDLTVVGSGSINGFGSSFWESLDFNNCNNLKISGITSK DSPRNHISIDSCNIVMISNIQLFAPETSPNTDGIDISTSTNVDISKSTIGTGDDCIALNTGCVNINITEIVCGPGHGISIGSLGANGQVAKVENVQVTHC IFNKTTNGARIKTCQGGEGYVKHIYFEHITIIDAKNPIIIDQHYVDKGHSSFESNKDSEAVAISDVKFIDFHGTTPNENIITLNCSKIKPCKNIVFNDIN ITTEEGGKPKSDCNYVM |
Full Sequence |
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Protein Sequence Length: 347 Download |
MCGDEGDTKT ILVPSSQTFL LQPLQFQGPC GSSPVFQMDG EIVAPSDESL WLNLDQKSKK 60 WISFSNVNDL TVVGSGSING FGSSFWESLD FNNCNNLKIS GITSKDSPRN HISIDSCNIV 120 MISNIQLFAP ETSPNTDGID ISTSTNVDIS KSTIGTGDDC IALNTGCVNI NITEIVCGPG 180 HGISIGSLGA NGQVAKVENV QVTHCIFNKT TNGARIKTCQ GGEGYVKHIY FEHITIIDAK 240 NPIIIDQHYV DKGHSSFESN KDSEAVAISD VKFIDFHGTT PNENIITLNC SKIKPCKNIV 300 FNDINITTEE GGKPKSDCNY VMGNSECIKS RLLFLQETKS NRKKVG* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-63 | 2 | 313 | 331 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-73 | 2 | 325 | 340 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-75 | 9 | 321 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 6.0e-88 | 1 | 312 | 320 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 9.0e-133 | 2 | 325 | 325 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC79138.1 | 0 | 1 | 325 | 50 | 369 | putative polygalacturonase [Arabidopsis thaliana] |
EMBL | CAA20037.1 | 0 | 2 | 326 | 41 | 359 | putative polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_195292.2 | 0 | 2 | 326 | 51 | 379 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_198105.2 | 0 | 2 | 325 | 80 | 399 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_199296.1 | 0 | 1 | 325 | 1 | 320 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 2e-20 | 11 | 327 | 30 | 339 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 1ib4_A | 2e-20 | 11 | 327 | 30 | 339 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 1ia5_A | 2e-20 | 11 | 327 | 30 | 339 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1bhe_A | 4e-18 | 4 | 309 | 37 | 364 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 8e-17 | 70 | 327 | 72 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CX192293 | 259 | 11 | 258 | 0 |
CV536748 | 262 | 40 | 290 | 0 |
CK252914 | 222 | 89 | 310 | 0 |
EY474520 | 236 | 88 | 323 | 0 |
GO013888 | 221 | 104 | 323 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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