Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 885302 |
Family | AA3 |
Protein Properties | Length: 561 Molecular Weight: 61375.9 Isoelectric Point: 6.2892 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 38 | 559 | 0 |
LAPKHARFDYIIIGGGTAGCALAATLSQNASVLVLERGGSPYDNPTASDIGNFANTLFNNTPNSWSQHFISEDGVYNTRPRVLGGGSVINGGFYTRAGDD YVDEAEWEMEEVEASYQWVEKKLVFKPQVMGWQSAFKDGLLEAGEFPDNGFTYDHIYGTKIGGTIFDHAGHRHTAANLLEYADPEAIVVYLHAYVHKILF TTKGSQKPKAYEVIFEDANGMFHKAELANNAMNEVILSAGAMGSPQLLMLSGVGPAAHLAAHGVNPLVLDHPMVGHEIADNPMNVVFIPSPQPVEVSLIQ TVGITKFDSYIEGGSGLSLSFDLTRRFFDGVLNLFNETSRTTSRNILTHSIEVLLKSLDLGLDVMINGGLIVQKIDGPASKGHMELRNTDPRDNPSVTFN YYQEPEDLNKCVKGLNTVIQTINSKAFSKYKYPGVTARELLNLMLGLPINLRTRHVTSTFNLTQFCIDTVMSIWHYHGGCQVGRVVDKNYKVIGIDSLRV IDGSTFLKSPGTNPQATVMMLG |
Full Sequence |
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Protein Sequence Length: 561 Download |
MTIISCIFRN ILVAILILSG SCYCDKAGHY TFMKDATLAP KHARFDYIII GGGTAGCALA 60 ATLSQNASVL VLERGGSPYD NPTASDIGNF ANTLFNNTPN SWSQHFISED GVYNTRPRVL 120 GGGSVINGGF YTRAGDDYVD EAEWEMEEVE ASYQWVEKKL VFKPQVMGWQ SAFKDGLLEA 180 GEFPDNGFTY DHIYGTKIGG TIFDHAGHRH TAANLLEYAD PEAIVVYLHA YVHKILFTTK 240 GSQKPKAYEV IFEDANGMFH KAELANNAMN EVILSAGAMG SPQLLMLSGV GPAAHLAAHG 300 VNPLVLDHPM VGHEIADNPM NVVFIPSPQP VEVSLIQTVG ITKFDSYIEG GSGLSLSFDL 360 TRRFFDGVLN LFNETSRTTS RNILTHSIEV LLKSLDLGLD VMINGGLIVQ KIDGPASKGH 420 MELRNTDPRD NPSVTFNYYQ EPEDLNKCVK GLNTVIQTIN SKAFSKYKYP GVTARELLNL 480 MLGLPINLRT RHVTSTFNLT QFCIDTVMSI WHYHGGCQVG RVVDKNYKVI GIDSLRVIDG 540 STFLKSPGTN PQATVMMLGR * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR03970 | Rv0697 | 9.0e-22 | 67 | 559 | 540 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
pfam05199 | GMC_oxred_C | 2.0e-23 | 415 | 559 | 150 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
TIGR01810 | betA | 6.0e-28 | 46 | 559 | 574 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
COG2303 | BetA | 5.0e-35 | 42 | 560 | 566 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 25 | 560 | 539 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB11041.1 | 0 | 1 | 560 | 1 | 586 | mandelonitrile lyase-like protein [Arabidopsis thaliana] |
DDBJ | BAB11043.1 | 0 | 4 | 560 | 5 | 563 | mandelonitrile lyase-like protein [Arabidopsis thaliana] |
RefSeq | NP_200006.1 | 0 | 1 | 560 | 1 | 582 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
RefSeq | NP_200008.1 | 0 | 4 | 560 | 5 | 566 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
RefSeq | NP_567032.1 | 0 | 8 | 560 | 9 | 557 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3red_L | 0 | 29 | 560 | 11 | 508 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_K | 0 | 29 | 560 | 11 | 508 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_J | 0 | 29 | 560 | 11 | 508 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_I | 0 | 29 | 560 | 11 | 508 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_H | 0 | 29 | 560 | 11 | 508 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |