Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 887386 |
Family | GH28 |
Protein Properties | Length: 492 Molecular Weight: 53517.1 Isoelectric Point: 6.4968 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 117 | 445 | 0 |
NNENNTDSVLLVPYGYTFMIQSTIFTGPCRSYQFFQVDGTIVTPDGPESWPSNISKRQWLVFYRVNGMSLKGDGVIDGRGQKWWDLPCKPHRSVNKSAIV AGPCDSPIALRFFMSSNLRVEGLQIKNSPQFHFRFDGCQGVHVESLHITAPPLSPNTDGIHIENSNSVTIYNSIISNGDDCVSIGSGSYDVDIRNLTCGP GGHGISIGSLGNHNSRACVSNITVRDSVIKYSDNGVRIKTWQGGSGSVSGVTFNNIHVDSVRNPIIIDQYYCMTKDCANKTSAVFVSDIAYQGIKGTYDI RSPPMHFGCSDAIPCTNLTLSDIELLPAK |
Full Sequence |
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Protein Sequence Length: 492 Download |
MLTSTYNRNQ ILCFMTLILT LVSLTEARSH HHKEKRKHNN HNHHSSKPKP PSSSISQPPT 60 PPPGPPDSPA PSVPPSPSDE PGDDNNGIYN VRKYGAVGDG ETDDTEAFKM AWDSACNNEN 120 NTDSVLLVPY GYTFMIQSTI FTGPCRSYQF FQVDGTIVTP DGPESWPSNI SKRQWLVFYR 180 VNGMSLKGDG VIDGRGQKWW DLPCKPHRSV NKSAIVAGPC DSPIALRFFM SSNLRVEGLQ 240 IKNSPQFHFR FDGCQGVHVE SLHITAPPLS PNTDGIHIEN SNSVTIYNSI ISNGDDCVSI 300 GSGSYDVDIR NLTCGPGGHG ISIGSLGNHN SRACVSNITV RDSVIKYSDN GVRIKTWQGG 360 SGSVSGVTFN NIHVDSVRNP IIIDQYYCMT KDCANKTSAV FVSDIAYQGI KGTYDIRSPP 420 MHFGCSDAIP CTNLTLSDIE LLPAKGEFVL DPFCWNAYGI AEELSIPPVW CLMSDPPKGL 480 QGSLVDKCGS S* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 7.0e-80 | 90 | 476 | 395 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 7.0e-81 | 85 | 447 | 365 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-88 | 124 | 441 | 318 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 9.0e-96 | 90 | 441 | 355 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-119 | 88 | 475 | 390 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD22651.1 | 0 | 7 | 490 | 5 | 451 | AC007138_15 putative polygalacturonidase [Arabidopsis thaliana] |
RefSeq | NP_192098.2 | 0 | 7 | 490 | 5 | 467 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_563654.1 | 0 | 1 | 491 | 1 | 491 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002320271.1 | 0 | 84 | 488 | 38 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515219.1 | 0 | 56 | 488 | 84 | 537 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 8e-25 | 153 | 445 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 8e-25 | 153 | 445 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 8e-25 | 153 | 445 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 8e-25 | 153 | 445 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 8e-25 | 153 | 445 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |