Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 887420 |
Family | GH28 |
Protein Properties | Length: 423 Molecular Weight: 44483.9 Isoelectric Point: 8.2892 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 77 | 395 | 0 |
QVCDSPVPATLLVPKGQFLAGPVIFAGPCKSKVTVNVQGTIIATTSGYATPEWFLFERVDNLVLTGTGTFHGKGEAVWKADGCGKKVQCNLPPTSLKFRN MKNVEINGISSVNAKAFHMFLVKTENVNIQNIKLIAPAESPNTDGIHLSNADNVSILDSTIATGDDCVSVGRGSNNVTVERVICGPGHGLSVGSLGKYKN EEDVSGIHVNNCTMVETDNGLRIKTWGGSDPSKAVDIKFENIIMQSVKNPIIIDQNYGSRGGDSQVAISDILFKNIRGTTITKDIVQIMCSKSVPCKGVN VVDVNLNYVGKTGGEKKSS |
Full Sequence |
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Protein Sequence Length: 423 Download |
MANARSLVAE ANNINVGSLI LMALVFGSCV ANGEYLGGRR GLAANSGNPT VYDITKFGAV 60 GDGSTNTFKA FLNTWIQVCD SPVPATLLVP KGQFLAGPVI FAGPCKSKVT VNVQGTIIAT 120 TSGYATPEWF LFERVDNLVL TGTGTFHGKG EAVWKADGCG KKVQCNLPPT SLKFRNMKNV 180 EINGISSVNA KAFHMFLVKT ENVNIQNIKL IAPAESPNTD GIHLSNADNV SILDSTIATG 240 DDCVSVGRGS NNVTVERVIC GPGHGLSVGS LGKYKNEEDV SGIHVNNCTM VETDNGLRIK 300 TWGGSDPSKA VDIKFENIIM QSVKNPIIID QNYGSRGGDS QVAISDILFK NIRGTTITKD 360 IVQIMCSKSV PCKGVNVVDV NLNYVGKTGG EKKSSSGGLV GALCDNANVI FGGKLSFPMC 420 PK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-81 | 32 | 420 | 401 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 1.0e-82 | 51 | 384 | 345 | + polygalacturonase | ||
PLN02793 | PLN02793 | 2.0e-87 | 51 | 382 | 346 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-92 | 79 | 384 | 311 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 6.0e-115 | 21 | 421 | 410 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABW24665.1 | 0 | 1 | 422 | 1 | 421 | pollen-specific polygalacturonase [Brassica rapa subsp. campestris] |
EMBL | CBI36886.1 | 0 | 1 | 420 | 1 | 414 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_171778.1 | 0 | 1 | 422 | 1 | 422 | PGA4 (POLYGALACTURONASE 4); polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002301488.1 | 0 | 68 | 420 | 1 | 352 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301489.1 | 0 | 17 | 420 | 5 | 412 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-19 | 140 | 362 | 113 | 341 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 0.000000000000007 | 43 | 382 | 12 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_B | 0.000000000000009 | 120 | 383 | 55 | 322 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_A | 0.000000000000009 | 120 | 383 | 55 | 322 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ia5_A | 0.000000000000009 | 120 | 383 | 55 | 322 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |