Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 887643 |
Family | PL1 |
Protein Properties | Length: 433 Molecular Weight: 47891 Isoelectric Point: 8.6189 |
Chromosome | Chromosome/Scaffold: 20 Start: 31123 End: 35886 |
Description | Disease resistance protein (TIR-NBS-LRR class) |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 144 | 349 | 0 |
IQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIVHGLHIHDCRPTGNAMVRSSETHFGWRTMADGDAISIFGSSHVWID HNSLSHCADGLVDAVMGSTAITISNNHLTHHNEVMLLGHSDSYMRDKAMQVTIAYNHFGVGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQ GNRYAA |
Full Sequence |
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Protein Sequence Length: 433 Download |
MAVLPTRLLA MMCLLLFVGA MEKNTTHDKI SSLPRSDENE WNQHAVTNPD EVAGEVLALT 60 EMSVRNHTER RKLGYFTCGT GNPIDDCWRC DRNWHKNRKR LADCGIGFGR NAIGGRDGRF 120 YVVTDPRDDN PVNPRPGTLR HAVIQDRPLW IVFKRDMVIQ LKQELIVNSF KTIDGRGANV 180 HIANGGCITI QFVTNVIVHG LHIHDCRPTG NAMVRSSETH FGWRTMADGD AISIFGSSHV 240 WIDHNSLSHC ADGLVDAVMG STAITISNNH LTHHNEVMLL GHSDSYMRDK AMQVTIAYNH 300 FGVGLIQRMP RCRHGYFHVV NNDYTHWEMY AIGGSANPTI NSQGNRYAAP KNPFAKEVTK 360 RVDTPASHWK GWNWRSEGDL LQNGAYFTSS GAAASGSYAR ASSLSAKSSS LVGHITSDAG 420 ALPCRRGRQC SS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 4.0e-27 | 162 | 345 | 196 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 7.0e-71 | 162 | 347 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-80 | 156 | 351 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ADD62392.1 | 0 | 23 | 430 | 42 | 445 | pectase lyase [Prunus persica] |
DDBJ | BAF43573.1 | 0 | 23 | 430 | 22 | 425 | pectate lyase [Prunus persica] |
RefSeq | NP_563715.1 | 0 | 23 | 432 | 22 | 431 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | NP_567409.1 | 0 | 38 | 430 | 77 | 470 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002297822.1 | 0 | 8 | 430 | 10 | 450 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 82 | 422 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 82 | 422 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-16 | 151 | 347 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 8e-16 | 160 | 348 | 119 | 331 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.000000000005 | 160 | 347 | 71 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |