Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 887756 |
Family | GH28 |
Protein Properties | Length: 395 Molecular Weight: 41763.7 Isoelectric Point: 9.6811 |
Chromosome | Chromosome/Scaffold: 871 Start: 451 End: 1630 |
Description | Protein of Unknown Function (DUF239) |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 52 | 379 | 0 |
QGACGSVSSATVVVPTGTFLLKVITFGGPCKSKITFQVAGTIVAPEDYRTFGNSGYWILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFN SAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNVRLVAPGDSPNTDGFTVQFSTGVTFTGSTVQTGDDCVAIGQGTRNFLISKLACGPGHGVSIGSLAKQL NEDGVENVTVSSSVFTGTQNGVRIKSWARPSTGFVRNVFFQNLIMKNVQNPIIIDQNYCPSKQGCPTEHSGVKISQVTYKNIQGTSATQQAMNLACSKSN PCTGITLQDIKLIYNKGTPATSFCFNAV |
Full Sequence |
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Protein Sequence Length: 395 Download |
MTKPAITFPL IFTLLTFIDV SSSASIVFNV VSFGAKPDGV TDSTAAFLKA WQGACGSVSS 60 ATVVVPTGTF LLKVITFGGP CKSKITFQVA GTIVAPEDYR TFGNSGYWIL FNKVNRFSLV 120 GGTFDARANG FWSCRKSGQN CPPGVRSISF NSAKDVIISG VKSMNSQVSH MTLNGCTNVV 180 VRNVRLVAPG DSPNTDGFTV QFSTGVTFTG STVQTGDDCV AIGQGTRNFL ISKLACGPGH 240 GVSIGSLAKQ LNEDGVENVT VSSSVFTGTQ NGVRIKSWAR PSTGFVRNVF FQNLIMKNVQ 300 NPIIIDQNYC PSKQGCPTEH SGVKISQVTY KNIQGTSATQ QAMNLACSKS NPCTGITLQD 360 IKLIYNKGTP ATSFCFNAVG KNLGVIQPTS CLNR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 1.0e-85 | 55 | 378 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 9.0e-90 | 11 | 388 | 385 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 6.0e-101 | 20 | 391 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 6.0e-103 | 27 | 393 | 374 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 0 | 1 | 394 | 394 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172056.1 | 0 | 1 | 394 | 1 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | NP_172057.1 | 0 | 1 | 394 | 1 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | NP_181917.1 | 0 | 10 | 392 | 6 | 392 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002309713.1 | 0 | 1 | 392 | 1 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 1 | 392 | 1 | 390 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 3e-21 | 41 | 340 | 6 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 3e-21 | 41 | 340 | 6 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 3e-21 | 41 | 340 | 6 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 3e-21 | 41 | 340 | 6 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 3e-21 | 41 | 340 | 6 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |